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BaseInfo

ncRNA ID ath-miR5630a
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:12011152-12011223 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 48 - GCUAAGAGCGGUUCUGAUGGA - 68
Stem-loop(if miRNA) C U    -    G      -  --A     -    UG
 G GGCU AAGA CGGUUC UG   UGGAG GCGC  G
 | |||| |||| |||||| ||   ||||| ||||  U
 C UCGA UUCU GCUAAG AC   ACCUU UGCG  U
U U    A    A      C  CAA     G    UU
Stem-loop sequence CGUGGCUAAGAGCGGUUCUGAUGGAGGCGCUGGUUUUGCGUGUUCCAAACCACGAAUCGAUCUUAAGCUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY054156.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:214   UCCAUCAGAACCGCUCUUAGC   234

0.0 Arabidopsis thaliana At1g33140/T9L6_10 mRNA, complete cds NA coding protein psRNATarget
AF339694.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:214   UCCAUCAGAACCGCUCUUAGC   234

0.0 Arabidopsis thaliana putative ribosomal protein L9 (At1g33120) mRNA, complete cds NA coding protein psRNATarget
AY128910.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:214   UCCAUCAGAACCGCUCUUAGC   234

0.0 Arabidopsis thaliana ribosomal protein L9, putative (At1g33120) mRNA, complete cds NA coding protein psRNATarget
BX813929.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:206   UCCAUCAGAACCGCUCUUAGC   226

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB48ZD08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY072446.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:258   UCCAUCAGAACCGCUCUUAGC   278

0.0 Arabidopsis thaliana ribosomal protein L9, putative (At1g33120) mRNA, complete cds NA coding protein psRNATarget
AF324688.2
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:294   UCCAUCAGAACCGCUCUUAGC   314

0.0 Arabidopsis thaliana At1g33120 (At1g33120/T9L6_8) mRNA, complete cds NA coding protein psRNATarget
AY058051.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:268   UCCAUCAGAACCGCUCUUAGC   288

0.0 Arabidopsis thaliana At1g33140/T9L6_10 mRNA, complete cds NA coding protein psRNATarget
BX814591.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:282   UCCAUCAGAACCGCUCUUAGC   302

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB83ZB06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AF326873.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:294   UCCAUCAGAACCGCUCUUAGC   314

0.0 Arabidopsis thaliana putative ribosomal protein L9 (At1g33120) mRNA, complete cds NA coding protein psRNATarget
AY086680.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:300   UCCAUCAGAACCGCUCUUAGC   320

0.0 Arabidopsis thaliana clone 26744 mRNA, complete sequence NA coding protein psRNATarget
BX816763.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:287   UCCAUCAGAACCGCUCUUAGC   307

0.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AF375419.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:262   UCCAUCAGAACCGCUCUUAGC   282

0.0 Arabidopsis thaliana At1g33140/T9L6_10 mRNA, complete cds NA coding protein psRNATarget
AY039593.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:293   UCCAUCAGAACCGCUCUUAGC   313

0.0 Arabidopsis thaliana At1g33140/T9L6_10 mRNA, complete cds NA coding protein psRNATarget
NM_103048.5
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:349   UCCAUCAGAACCGCUCUUAGC   369

0.0 Arabidopsis thaliana Ribosomal protein L6 family (PGY2), mRNA Ribosomal protein L6 family(PGY2) coding protein psRNATarget
NM_103046.4
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |||||||||||||||||||||
targets:321   UCCAUCAGAACCGCUCUUAGC   341

0.0 Arabidopsis thaliana Ribosomal protein L6 family mRNA Ribosomal protein L6 family(AT1G33120) coding protein psRNATarget
X91958.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  ||||||||||||||||||||*
targets:240   UCCAUCAGAACCGCUCUUAGA   260

1.0 A.thaliana mRNA for 60S ribosomal protein L9 NA coding protein psRNATarget
AF441713.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:814   UGCAACAGAACAGCUCUUAGC   834

2.5 Arabidopsis thaliana putative ascorbate peroxidase APX4 (AT4g09010) mRNA, partial cds NA coding protein psRNATarget
BX829004.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:738   UGCAACAGAACAGCUCUUAGC   758

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL59ZE12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY072503.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:843   UGCAACAGAACAGCUCUUAGC   863

2.5 Arabidopsis thaliana putative L-ascorbate peroxidase (AT4g09010) mRNA, complete cds NA coding protein psRNATarget
BX827063.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:896   UGCAACAGAACAGCUCUUAGC   916

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZH01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AF370534.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:897   UGCAACAGAACAGCUCUUAGC   917

2.5 Arabidopsis thaliana Putative L-ascorbate peroxidase (AT4g09010) mRNA, complete cds NA coding protein psRNATarget
AY089139.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:926   UGCAACAGAACAGCUCUUAGC   946

2.5 Arabidopsis thaliana clone 37435 mRNA, complete sequence NA coding protein psRNATarget
NM_116970.3
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:967   UGCAACAGAACAGCUCUUAGC   987

2.5 Arabidopsis thaliana ascorbate peroxidase 4 (TL29), mRNA ascorbate peroxidase 4(TL29) coding protein psRNATarget
NM_001340607.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:1077   UGCAACAGAACAGCUCUUAGC   1097

2.5 Arabidopsis thaliana ascorbate peroxidase 4 (TL29), partial mRNA ascorbate peroxidase 4(TL29) coding protein psRNATarget
NM_001340606.1
ncRNA:21   AGGUAGUCUUGGCGAGAAUCG   1
  |*||*||||||*|||||||||
targets:1130   UGCAACAGAACAGCUCUUAGC   1150

2.5 Arabidopsis thaliana ascorbate peroxidase 4 (TL29), partial mRNA ascorbate peroxidase 4(TL29) coding protein psRNATarget

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).
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