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BaseInfo

ncRNA ID zma-miR160a-5p
Species Zea mays
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 21
Mature sequence(if miRNA) NA - UGCCUGGCUCCCUGUAUGCCA - NA
Stem-loop(if miRNA) U  UG       C       C          A   GU    CC     CAGA
 UG  UGCGUGC UGGCUCC UGUAUGCCAC CAU  AGCG  CAACC    U
 ||  ||||||| ||||||| |||||||||| |||  ||||  |||||
 AC  ACGUACG ACCGGGG ACGUGCGGUG GUG  UCGU  GUUGG    G
U  CU       A       A          G   --    CC     AAUY
Stem-loop sequence UUGUGUGCGUGCCUGGCUCCCUGUAUGCCACACAUGUAGCGCCCAACCCAGAUGYUAAGGUUGCCUGCUGUGGGUGGCGUGCAAGGGGCCAAGCAUGCAUCCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402934.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |||||||||||||||||||||
targets:72   UGGCAUACAGGGAGCCAGGCA   92

0.0 Sequence 1059 from Patent EP2074227 NA coding protein psRNATarget
LQ235064.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |||||||||||||||||||||
targets:72   UGGCAUACAGGGAGCCAGGCA   92

0.0 Sequence 1059 from Patent EP2985353 NA coding protein psRNATarget
JB163395.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |||||||||||||||||||||
targets:72   UGGCAUACAGGGAGCCAGGCA   92

0.0 Sequence 1059 from Patent EP2559767 NA coding protein psRNATarget
BT068739.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |||||||||||||||||||||
targets:633   UGGCAUACAGGGAGCCAGGCA   653

0.0 Zea mays full-length cDNA clone ZM_BFb0377F03 mRNA, complete cds NA coding protein psRNATarget
NM_001176580.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |||||||||||||||||||||
targets:633   UGGCAUACAGGGAGCCAGGCA   653

0.0 Zea mays uncharacterized LOC100383967 (LOC100383967), mRNA NA coding protein psRNATarget
BT084457.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |||||||||||||||||||||
targets:952   UGGCAUACAGGGAGCCAGGCA   972

0.0 Zea mays full-length cDNA clone ZM_BFb0118K06 mRNA, complete cds NA coding protein psRNATarget
EU950410.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:23   AGGCAUACAGGGAGCCAGGCA   43

0.0 Zea mays clone 490802 mRNA sequence NA coding protein psRNATarget
EU951398.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:12   AGGCAUACAGGGAGCCAGGCA   32

0.0 Zea mays clone 701434 mRNA sequence NA coding protein psRNATarget
JX428504.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1311   AGGCAUACAGGGAGCCAGGCA   1331

0.0 Zea mays subsp. mays clone pUT3102 ARF2 ARF type transcription factor mRNA, partial cds NA coding protein psRNATarget
NM_001177066.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1332   AGGCAUACAGGGAGCCAGGCA   1352

0.0 Zea mays auxin response factor 21 (ARF21), mRNA NA coding protein psRNATarget
KJ727965.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1338   AGGCAUACAGGGAGCCAGGCA   1358

0.0 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds NA coding protein psRNATarget
XM_008665166.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1407   AGGCAUACAGGGAGCCAGGCA   1427

0.0 PREDICTED: Zea mays auxin response factor 10 (LOC103641851), mRNA NA coding protein psRNATarget
BT066347.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1744   AGGCAUACAGGGAGCCAGGCA   1764

0.0 Zea mays full-length cDNA clone ZM_BFb0348D12 mRNA, complete cds NA coding protein psRNATarget
NM_001348794.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1746   AGGCAUACAGGGAGCCAGGCA   1766

0.0 Zea mays auxin response factor 17 (ARF17), mRNA NA coding protein psRNATarget
NM_001165660.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1604   AGGCAUACAGGGAGCCAGGCA   1624

0.0 Zea mays auxin response factor 2 (ARF2), mRNA NA coding protein psRNATarget
BT060467.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1604   AGGCAUACAGGGAGCCAGGCA   1624

0.0 Zea mays full-length cDNA clone ZM_BFb0003E21 mRNA, complete cds NA coding protein psRNATarget
XM_008649977.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1891   AGGCAUACAGGGAGCCAGGCA   1911

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008649975.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1895   AGGCAUACAGGGAGCCAGGCA   1915

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008649976.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1964   AGGCAUACAGGGAGCCAGGCA   1984

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649974.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:1967   AGGCAUACAGGGAGCCAGGCA   1987

0.0 PREDICTED: Zea mays auxin response factor 21 (ARF21), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645286.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *||||||||||||||||||||
targets:2254   AGGCAUACAGGGAGCCAGGCA   2274

0.0 PREDICTED: Zea mays Auxin response factor 16 (LOC100280136), transcript variant X1, mRNA NA coding protein psRNATarget
EU941456.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |*||||=||||||||||||||
targets:254   UAGCAUGCAGGGAGCCAGGCA   274

1.0 Zea mays clone 1453850 mRNA sequence NA coding protein psRNATarget
JX428517.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |*||||=||||||||||||||
targets:1188   UAGCAUGCAGGGAGCCAGGCA   1208

1.0 Zea mays subsp. mays clone pUT3116 ARF5 transcription factor mRNA, partial cds NA coding protein psRNATarget
BT067327.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |*||||=||||||||||||||
targets:1280   UAGCAUGCAGGGAGCCAGGCA   1300

1.0 Zea mays full-length cDNA clone ZM_BFc0012D17 mRNA, complete cds NA coding protein psRNATarget
NM_001176127.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  |*||||=||||||||||||||
targets:1280   UAGCAUGCAGGGAGCCAGGCA   1300

1.0 Zea mays auxin response factor 5 (ARF5), mRNA NA coding protein psRNATarget
EU955385.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|*||||||||||||||||||
targets:1499   AGCCAUACAGGGAGCCAGGCA   1519

1.0 Zea mays clone 1530377 mRNA sequence NA coding protein psRNATarget
XM_008680610.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|*||||||||||||||||||
targets:1689   AGCCAUACAGGGAGCCAGGCA   1709

1.0 PREDICTED: Zea mays auxin response factor 8 (LOC103653810), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680611.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|*||||||||||||||||||
targets:1697   AGCCAUACAGGGAGCCAGGCA   1717

1.0 PREDICTED: Zea mays auxin response factor 8 (LOC103653810), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001349854.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|*||||||||||||||||||
targets:1488   AGCCAUACAGGGAGCCAGGCA   1508

1.0 Zea mays auxin response factor 8 (ARF8), mRNA NA coding protein psRNATarget
XM_008675990.2
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|||||*|=||||||||||||
targets:1312   AGGCAUCCGGGGAGCCAGGCA   1332

2.5 PREDICTED: Zea mays uncharacterized LOC103650414 (LOC103650414), mRNA NA coding protein psRNATarget
XM_020545962.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|||||*|=||||||||||||
targets:2655   AGGCAUCCGGGGAGCCAGGCA   2675

2.5 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020545964.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|||||*|=||||||||||||
targets:2686   AGGCAUCCGGGGAGCCAGGCA   2706

2.5 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020545963.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|||||*|=||||||||||||
targets:2765   AGGCAUCCGGGGAGCCAGGCA   2785

2.5 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545961.1
ncRNA:21   ACCGUAUGUCCCUCGGUCCGU   1
  *|||||*|=||||||||||||
targets:2760   AGGCAUCCGGGGAGCCAGGCA   2780

2.5 PREDICTED: Zea mays uncharacterized LOC103641767 (LOC103641767), transcript variant X1, mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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