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BaseInfo

ncRNA ID	zma-miR160a-3p
Species	Zea mays
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - GCGUGCAAGGGGCCAAGCAUG - NA
Stem-loop(if miRNA)	U  UG       C       C          A   GU    CC     CAGA  UG  UGCGUGC UGGCUCC UGUAUGCCAC CAU  AGCG  CAACC    U  ||  ||||||| ||||||| |||||||||| |||  ||||  |||||  AC  ACGUACG ACCGGGG ACGUGCGGUG GUG  UCGU  GUUGG    G U  CU       A       A          G   --    CC     AAUY
Stem-loop sequence	UUGUGUGCGUGCCUGGCUCCCUGUAUGCCACACAUGUAGCGCCCAACCCAGAUGYUAAGGUUGCCUGCUGUGGGUGGCGUGCAAGGGGCCAAGCAUGCAUCCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068739.2	ncRNA:21   GUACGAACCGGGGAACGUGCG   1   ||||||||||||||||||||| targets:566   CAUGCUUGGCCCCUUGCACGC   586 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0377F03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176580.1	ncRNA:21   GUACGAACCGGGGAACGUGCG   1   ||||||||||||||||||||| targets:566   CAUGCUUGGCCCCUUGCACGC   586 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383967 (LOC100383967), mRNA	NA	coding protein	psRNATarget
JB163395.1	ncRNA:21   GUACGAACCGGGGAACGUGCG   1   ||||||||||=|||||||||| targets:9   CAUGCUUGGCUCCUUGCACGC   29 Target Full Sequence	1.5	Sequence 1059 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235064.1	ncRNA:21   GUACGAACCGGGGAACGUGCG   1   ||||||||||=|||||||||| targets:9   CAUGCUUGGCUCCUUGCACGC   29 Target Full Sequence	1.5	Sequence 1059 from Patent EP2985353	NA	coding protein	psRNATarget
HI402934.1	ncRNA:21   GUACGAACCGGGGAACGUGCG   1   ||||||||||=|||||||||| targets:9   CAUGCUUGGCUCCUUGCACGC   29 Target Full Sequence	1.5	Sequence 1059 from Patent EP2074227	NA	coding protein	psRNATarget
BT084457.2	ncRNA:21   GUACGAACCGGGGAACGUGCG   1   ||||||||||=|||||||||| targets:890   CAUGCUUGGCUCCUUGCACGC   910 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0118K06 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).