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BaseInfo

ncRNA ID	zma-miR169r-5p
Species	Zea mays
Class	miRNA
Genome position	chr9:109138534-109138659 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	105 - CAGCCAAGGAUGACUUGCCGG - 125
Stem-loop(if miRNA)	-- C         UG          UAUUUU A    -     U  CAG   AG  --UA G   U   G AGCCAAGGA  ACUUGCCGGG      G GCAU GCAUG UA   GGG  CA    U CAA C   | |||||||||  ||||||||||      | |||| ||||| ||   |||  ||    | ||| U   C UCGGUUCCU  UGAACGGCCU      C CGUG CGUGC AU   CCC  GU    A GUU G UA A         GU          -UCUGU -    G     C  --A   GA  UUUA G   U
Stem-loop sequence	GCAGCCAAGGAUGACUUGCCGGGUAUUUUGAGCAUGCAUGUUACAGGGGAGCAUAUGCAAUCUGUUUGGAAUUUUGAGCCCAUACCGUGCGGUGCCUGUCUUCCGGCAAGUUGUCCUUGGCUACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548143.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ||||||||||||||||||||| targets:767   CCGGCAAGUCAUCCUUGGCUG   787 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648407 (LOC103648407), mRNA	NA	coding protein	psRNATarget
BT060668.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   ||||||||||||||||||||| targets:1023   CCGGCAAGUCAUCCUUGGCUG   1043 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0031E01 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||||||||||||||||* targets:545   CAGGCAAGUCAUCCUUGGCUA   565 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
BT054579.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||=*||||||||||||* targets:372   CAGGCAGCUCAUCCUUGGCUA   392 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0162O11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||||||||||||||||* targets:545   CAGGCAAGUCAUCCUUGGCUA   565 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
NM_001152615.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||=*||||||||||||* targets:372   CAGGCAGCUCAUCCUUGGCUA   392 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279619 (LOC100279619), mRNA	NA	coding protein	psRNATarget
BT062831.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*||||||||||||||||||* targets:304   UAGGCAAGUCAUCCUUGGCUA   324 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0354L14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176546.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*||||||||||||||||||* targets:932   UAGGCAAGUCAUCCUUGGCUA   952 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383927 (LOC100383927), mRNA	NA	coding protein	psRNATarget
BT068645.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*||||||||||||||||||* targets:932   UAGGCAAGUCAUCCUUGGCUA   952 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0360A11 mRNA, complete cds	NA	coding protein	psRNATarget
EZ065371.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:22   CUGGCAACUCAUCCUUGGCUU   42 Target Full Sequence	2.0	TSA: Zea mays contig01004, mRNA sequence	NA	coding protein	psRNATarget
EU944188.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:183   CUGGCAACUCAUCCUUGGCUU   203 Target Full Sequence	2.0	Zea mays clone 1711451 mRNA sequence	NA	coding protein	psRNATarget
BT062100.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:882   CUGGCAACUCAUCCUUGGCUU   902 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0214I24 mRNA, complete cds	NA	coding protein	psRNATarget
BT054250.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:933   CUGGCAACUCAUCCUUGGCUU   953 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0198B09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666328.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:939   CUGGCAACUCAUCCUUGGCUU   959 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X10, mRNA	NA	coding protein	psRNATarget
BT016638.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:939   CUGGCAACUCAUCCUUGGCUU   959 Target Full Sequence	2.0	Zea mays clone Contig471 mRNA sequence	NA	coding protein	psRNATarget
EU967250.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:949   CUGGCAACUCAUCCUUGGCUU   969 Target Full Sequence	2.0	Zea mays clone 300715 nuclear transcription factor Y subunit A-3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666311.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:965   CUGGCAACUCAUCCUUGGCUU   985 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU953946.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:939   CUGGCAACUCAUCCUUGGCUU   959 Target Full Sequence	2.0	Zea mays clone 1450156 mRNA sequence	NA	coding protein	psRNATarget
BT038953.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:988   CUGGCAACUCAUCCUUGGCUU   1008 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0345D16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546592.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:982   CUGGCAACUCAUCCUUGGCUU   1002 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY109469.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:939   CUGGCAACUCAUCCUUGGCUU   959 Target Full Sequence	2.0	Zea mays CL724_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008666319.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1009   CUGGCAACUCAUCCUUGGCUU   1029 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008666323.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1013   CUGGCAACUCAUCCUUGGCUU   1033 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546597.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1026   CUGGCAACUCAUCCUUGGCUU   1046 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546608.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1030   CUGGCAACUCAUCCUUGGCUU   1050 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X7, mRNA	NA	coding protein	psRNATarget
HI405806.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*||||||||||=|||||||* targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	2.5	Sequence 3931 from Patent EP2074227	NA	coding protein	psRNATarget
JB166267.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*||||||||||=|||||||* targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	2.5	Sequence 3931 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237936.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*||||||||||=|||||||* targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	2.5	Sequence 3931 from Patent EP2985353	NA	coding protein	psRNATarget
BT036893.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1303   CUGGCAACUCAUCCUUGGCUU   1323 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0146J08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139400.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1303   CUGGCAACUCAUCCUUGGCUU   1323 Target Full Sequence	2.0	Zea mays NF-YA1 (umc1568), mRNA	NA	coding protein	psRNATarget
BT069779.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1307   CUGGCAACUCAUCCUUGGCUU   1327 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0282K22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546602.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1662   CUGGCAACUCAUCCUUGGCUU   1682 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546611.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1666   CUGGCAACUCAUCCUUGGCUU   1686 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020546607.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1877   CUGGCAACUCAUCCUUGGCUU   1897 Target Full Sequence	2.0	PREDICTED: Zea mays NF-YA1 (umc1568), transcript variant X6, mRNA	NA	coding protein	psRNATarget
AY111961.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:347   UAGGCAAAUCAUUCUUGGCUG   367 Target Full Sequence	2.5	Zea mays CL834_3 mRNA sequence	NA	coding protein	psRNATarget
EU950981.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:481   GUGGCAAUUCAUCCUUGGCUU   501 Target Full Sequence	2.0	Zea mays clone 677229 mRNA sequence	NA	coding protein	psRNATarget
AY110209.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:852   UAGGCAAAUCAUUCUUGGCUG   872 Target Full Sequence	2.5	Zea mays CL834_-1 mRNA sequence	NA	coding protein	psRNATarget
EU954616.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1123   GUGGCAACUCAUCCUUGGCUU   1143 Target Full Sequence	2.0	Zea mays clone 1474061 nuclear transcription factor Y subunit A-3 mRNA, complete cds	NA	coding protein	psRNATarget
EU964705.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1126   GUGGCAACUCAUCCUUGGCUC   1146 Target Full Sequence	2.0	Zea mays clone 280955 nuclear transcription factor Y subunit A-3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679711.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||*||||||||||||=|| targets:323   UGGGCCAGUCAUCCUUGGUUG   343 Target Full Sequence	2.5	PREDICTED: Zea mays SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (LOC103652744), mRNA	NA	coding protein	psRNATarget
BT036648.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1031   GUGGCAACUCAUCCUUGGCUC   1051 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0127N08 mRNA, complete cds	NA	coding protein	psRNATarget
BT066403.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1093   GUGGCAACUCAUCCUUGGCUC   1113 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0117G04 mRNA, complete cds	NA	coding protein	psRNATarget
BT038709.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1111   GUGGCAACUCAUCCUUGGCUU   1131 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310L05 mRNA, complete cds	NA	coding protein	psRNATarget
BT018371.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1112   GUGGCAACUCAUCCUUGGCUU   1132 Target Full Sequence	2.0	Zea mays clone EL01N0306C05.d mRNA sequence	NA	coding protein	psRNATarget
BT018548.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1118   GUGGCAACUCAUCCUUGGCUC   1138 Target Full Sequence	2.0	Zea mays clone EL01N0438E07.d mRNA sequence	NA	coding protein	psRNATarget
NM_001153839.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1255   GUGGCAACUCAUCCUUGGCUU   1275 Target Full Sequence	2.0	Zea mays nuclear transcription factor Y subunit A-3 (LOC100280919), mRNA	NA	coding protein	psRNATarget
EU954602.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1255   GUGGCAACUCAUCCUUGGCUU   1275 Target Full Sequence	2.0	Zea mays clone 1472867 nuclear transcription factor Y subunit A-3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669055.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1123   GUGGCAACUCAUCCUUGGCUC   1143 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008669054.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1135   GUGGCAACUCAUCCUUGGCUC   1155 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008669052.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1173   GUGGCAACUCAUCCUUGGCUC   1193 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669050.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1185   GUGGCAACUCAUCCUUGGCUC   1205 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X1, mRNA	NA	coding protein	psRNATarget
KM655750.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1089   UAGGCAAAUCAUUCUUGGCUG   1109 Target Full Sequence	2.5	Zea mays NF-YA11 mRNA, complete cds	NA	coding protein	psRNATarget
BT069933.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1315   UAGGCAAAUCAUUCUUGGCUG   1335 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0328N11 mRNA, complete cds	NA	coding protein	psRNATarget
BT038299.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1235   UAGGCAAAUCAUUCUUGGCUG   1255 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224M21 mRNA, complete cds	NA	coding protein	psRNATarget
AY109487.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1134   GUGGCAACUCAUCCUUGGCUC   1154 Target Full Sequence	2.0	Zea mays CL795_1 mRNA sequence	NA	coding protein	psRNATarget
EU962352.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1443   GUGGCAACUCAUCCUUGGCUC   1463 Target Full Sequence	2.0	Zea mays clone 241983 nuclear transcription factor Y subunit A-3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139229.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1443   GUGGCAACUCAUCCUUGGCUC   1463 Target Full Sequence	2.0	Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), mRNA	NA	coding protein	psRNATarget
EU961865.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1423   GUGGCAAUUCAUCCUUGGCUU   1443 Target Full Sequence	2.0	Zea mays clone 238735 mRNA sequence	NA	coding protein	psRNATarget
XM_020552141.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1315   UAGGCAAAUCAUUCUUGGCUG   1335 Target Full Sequence	2.5	PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT036977.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1319   UAGGCAAAUCAUUCUUGGCUG   1339 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0150B05 mRNA, complete cds	NA	coding protein	psRNATarget
BT041906.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1360   UAGGCAAAUCAUUCUUGGCUG   1380 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0078A16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653171.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1271   GUGGCAACUCAUCCUUGGCUU   1291 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100280919), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU965152.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1367   UAGGCAAAUCAUUCUUGGCUG   1387 Target Full Sequence	2.5	Zea mays clone 284127 nuclear transcription factor Y subunit A-10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156465.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1367   UAGGCAAAUCAUUCUUGGCUG   1387 Target Full Sequence	2.5	Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), mRNA	NA	coding protein	psRNATarget
XM_008679358.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1386   UAGGCAAAUCAUUCUUGGCUG   1406 Target Full Sequence	2.5	PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546405.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1583   GUGGCAAUUCAUCCUUGGCUU   1603 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-7-like (LOC103644713), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679362.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1494   UAGGCAAAUCAUUCUUGGCUG   1514 Target Full Sequence	2.5	PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669053.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1495   GUGGCAACUCAUCCUUGGCUC   1515 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT035257.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1515   UAGGCAAAUCAUUCUUGGCUG   1535 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0051L17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138257.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1515   UAGGCAAAUCAUUCUUGGCUG   1535 Target Full Sequence	2.5	Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), mRNA	NA	coding protein	psRNATarget
XM_008669051.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1507   GUGGCAACUCAUCCUUGGCUC   1527 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100194182), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679356.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1557   UAGGCAAAUCAUUCUUGGCUG   1577 Target Full Sequence	2.5	PREDICTED: Zea mays nuclear transcription factor Y subunit A-10 (LOC100283565), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957863.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1377   UAGGCAAAUCAUUCUUGGCUG   1397 Target Full Sequence	2.5	Zea mays clone 1627559 nuclear transcription factor Y subunit A-10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553053.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1394   UAGGCAAAUCAUUCUUGGCUG   1414 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU956682.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1640   UAGGCAAAUCAUUCUUGGCUG   1660 Target Full Sequence	2.5	Zea mays clone 1570561 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682879.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1432   UAGGCAAAUCAUUCUUGGCUG   1452 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682880.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1457   UAGGCAAAUCAUUCUUGGCUG   1477 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682882.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1462   UAGGCAAAUCAUUCUUGGCUG   1482 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008682881.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1494   UAGGCAAAUCAUUCUUGGCUG   1514 Target Full Sequence	2.5	PREDICTED: Zea mays Nuclear transcription factor Y subunit A-10 (LOC100193094), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT064690.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   =*|||||*||||=|||||||| targets:1815   UAGGCAAAUCAUUCUUGGCUG   1835 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034D08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653172.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:1771   GUGGCAACUCAUCCUUGGCUU   1791 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100280919), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT062487.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   *=|||||*||||||||||||* targets:2077   GUGGCAACUCAUCCUUGGCUU   2097 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0304C09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645464.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:813   CAGGCAAUUCAUCCUUGGCUU   833 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008645463.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:914   CAGGCAAUUCAUCCUUGGCUU   934 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008645461.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:936   CAGGCAAUUCAUCCUUGGCUU   956 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008645462.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:946   CAGGCAAUUCAUCCUUGGCUU   966 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X5, mRNA	NA	coding protein	psRNATarget
AY110887.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:983   CAGGCAAUUCAUCCUUGGCUU   1003 Target Full Sequence	2.0	Zea mays CL807_1 mRNA sequence	NA	coding protein	psRNATarget
BT017464.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:979   CAGGCAAUUCAUCCUUGGCUU   999 Target Full Sequence	2.0	Zea mays clone EL01N0407G01.c mRNA sequence	NA	coding protein	psRNATarget
XM_008645460.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:996   CAGGCAAUUCAUCCUUGGCUU   1016 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645459.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1000   CAGGCAAUUCAUCCUUGGCUU   1020 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645458.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1013   CAGGCAAUUCAUCCUUGGCUU   1033 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU961977.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1007   CAGGCAAUUCAUCCUUGGCUU   1027 Target Full Sequence	2.0	Zea mays clone 239433 nuclear transcription factor Y subunit A-3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155603.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*|||||*||||||||||||* targets:1007   CAGGCAAUUCAUCCUUGGCUU   1027 Target Full Sequence	2.0	Zea mays nuclear transcription factor Y subunit A-3 (LOC100282696), mRNA	NA	coding protein	psRNATarget
HI405803.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||=*||||||||||||* targets:84   CAGGCAGCUCAUCCUUGGCUA   104 Target Full Sequence	3.0	Sequence 3928 from Patent EP2074227	NA	coding protein	psRNATarget
JB166264.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||=*||||||||||||* targets:84   CAGGCAGCUCAUCCUUGGCUA   104 Target Full Sequence	3.0	Sequence 3928 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237933.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |*||||=*||||||||||||* targets:84   CAGGCAGCUCAUCCUUGGCUA   104 Target Full Sequence	3.0	Sequence 3928 from Patent EP2985353	NA	coding protein	psRNATarget
EU950969.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=*||*||||||||||||||* targets:814   CUAGCUAGUCAUCCUUGGCUA   834 Target Full Sequence	3.0	Zea mays clone 677139 mRNA sequence	NA	coding protein	psRNATarget
XM_008676965.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=*||*||||||||||||||* targets:1072   CUAGCUAGUCAUCCUUGGCUC   1092 Target Full Sequence	3.0	PREDICTED: Zea mays myb-related protein Myb4 (LOC103651344), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).