ncRNA ID | zma-miR399j-5p |
Species | Zea mays |
Class | miRNA |
Genome position | chr9:24367084-24367258 [-] |
Reference genome | RefGen_v2 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 155 - AGGCAGCUCUCCUCUGGCAGG - 175 |
Stem-loop(if miRNA) |
---A            C       - AG       GUCA      CCAUCGACGACGGUUGCUUGGCUCUGCUAUGCUGUGUUCGUUCGU     GGCAGCUCUCCU UGGCAGG C  GCGCGCG    UCGUCG                                             C     |||||||||||| ||||||| |  |||||||    ||||||     CCGUUGAGAGGA ACCGUCC G  UGCGCGC    CGUACG                                             C CGUC            A       U CA       ---A      UGCGUACAAUGUGACGUUACGUACGUGCCGAUCGAUCGUGUGGUA |
Stem-loop sequence | AGGCAGCUCUCCUCUGGCAGGCAGGCGCGCGGUCAUCGUCGCCAUCGACGACGGUUGCUUGGCUCUGCUAUGCUGUGUUCGUUCGUCCAUGGUGUGCUAGCUAGCCGUGCAUGCAUUGCAGUGUAACAUGCGUGCAUGCACGCGCGUACGUCCUGCCAAAGGAGAGUUGCCCUGC |
1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |