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BaseInfo

ncRNA ID zma-miR399j-5p
Species Zea mays
Class miRNA
Genome position chr9:24367084-24367258 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 155 - AGGCAGCUCUCCUCUGGCAGG - 175
Stem-loop(if miRNA) ---A            C       - AG       GUCA      CCAUCGACGACGGUUGCUUGGCUCUGCUAUGCUGUGUUCGUUCGU
    GGCAGCUCUCCU UGGCAGG C  GCGCGCG    UCGUCG                                             C
    |||||||||||| ||||||| |  |||||||    ||||||
    CCGUUGAGAGGA ACCGUCC G  UGCGCGC    CGUACG                                             C
CGUC            A       U CA       ---A      UGCGUACAAUGUGACGUUACGUACGUGCCGAUCGAUCGUGUGGUA
Stem-loop sequence AGGCAGCUCUCCUCUGGCAGGCAGGCGCGCGGUCAUCGUCGCCAUCGACGACGGUUGCUUGGCUCUGCUAUGCUGUGUUCGUUCGUCCAUGGUGUGCUAGCUAGCCGUGCAUGCAUUGCAGUGUAACAUGCGUGCAUGCACGCGCGUACGUCCUGCCAAAGGAGAGUUGCCCUGC

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).