ncRNA ID | zma-miR319c-5p |
Species | Zea mays |
Class | miRNA |
Genome position | chr8:148277363-148277578 [-] |
Reference genome | RefGen_v2 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 175 - GAGCUCUCUUCAGUCCACUC - 194 |
Stem-loop(if miRNA) |
--G    AU   UUCUGUG    A    U            CU UA       U         --CA      G   AC          AC         A   U  G AAG    GUUU  GGC       GAAG GAGC CUCUUCAGUCCA  C  AAAUGGC GUAGGGUUU    UUAGCU CCG  UCAUCCAUUC  CUGCCAAGA CCA GG C   C    ||||  |||       |||| |||| ||||||||||||  |  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| ||| || |    CAAA  CCG       CUUC CUCG GGGAAGUCAGGU  G  UUUGUCG CAUCUCAAA    AAUCGA GGC  GGUGGGUGAG  GAUGGUUCU GGU CU G   G UCA    -C   --UUUAA    C    U            UG CA       -         CUAA      G   GC          CC         -   -  G AUG |
Stem-loop sequence | GGUUUAUGGCUUCUGUGGAAGAGAGCUCUCUUCAGUCCACUCUAAAAUGGCUGUAGGGUUUCAUUAGCUGCCGACUCAUCCAUUCACCUGCCAAGAACCAUGGGCAAGCGGUAGGUCUGGUCUUGGUAGCCGAGUGGGUGGCGCGGGAGCUAAAAUCAAACUCUACGCUGUUUACGGUUGGACUGAAGGGUGCUCCCUUCAAUUUGCCCAAACACU |
1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |