Search result

BaseInfo

ncRNA ID	zma-miR169q-5p
Species	Zea mays
Class	miRNA
Genome position	chr8:126521604-126521709 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UAGCCAAGAAUGGCUUGCCUA - 22
Stem-loop(if miRNA)	--       A   U        U   -     U    G      -  UCUU    G   UUAGCCA GAA GGCUUGCC AUC UCCAU AUUU GUCCAU CU    GGGA A   ||||||| ||| |||||||| ||| ||||| |||| |||||| ||    ||||   AAUCGGU CUU CCGGACGG UGG AGGUG UAAG UAGGUG GG    CCCU C UG       -   -        -   U     -    G      U  UACU    C
Stem-loop sequence	UUAGCCAAGAAUGGCUUGCCUAUCUCCAUUAUUUGGUCCAUCUUCUUGGGAGACCUCCCUCAUGGUGUGGAUGGAAUGUGGAUGGUGGCAGGCCUUCUGGCUAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166435.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||||||||||||||| targets:91   UAGGCAAGCCAUUCUUGGCUA   111 Target Full Sequence	0.0	Sequence 4099 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238104.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||||||||||||||| targets:91   UAGGCAAGCCAUUCUUGGCUA   111 Target Full Sequence	0.0	Sequence 4099 from Patent EP2985353	NA	coding protein	psRNATarget
HI405974.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||||||||||||||| targets:91   UAGGCAAGCCAUUCUUGGCUA   111 Target Full Sequence	0.0	Sequence 4099 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237936.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||=|||||||||||| targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	1.5	Sequence 3931 from Patent EP2985353	NA	coding protein	psRNATarget
HI405806.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||=|||||||||||| targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	1.5	Sequence 3931 from Patent EP2074227	NA	coding protein	psRNATarget
JB166267.1	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   ||||||||=|||||||||||| targets:123   UAGGCAAGUCAUUCUUGGCUA   143 Target Full Sequence	1.5	Sequence 3931 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008661589.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:656   GCGGCUAGCCAUUCUUGGCUU   676 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661591.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:1359   GCGGCUAGCCAUUCUUGGCUU   1379 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008661588.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:1359   GCGGCUAGCCAUUCUUGGCUU   1379 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661590.2	ncRNA:21   AUCCGUUCGGUAAGAACCGAU   1   **|||*||||||||||||||* targets:1516   GCGGCUAGCCAUUCUUGGCUU   1536 Target Full Sequence	2.0	PREDICTED: Zea mays cellulose synthase A catalytic subunit 5 [UDP-forming] (LOC103638772), transcript variant X3, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).