| ncRNA ID | zma-miR408b-5p |
| Species | Zea mays |
| Class | miRNA |
| Genome position | chr8:38488497-38488643 [-] |
| Reference genome | RefGen_v2 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 125 - CAGGGACGAGGCAGAGCAUGG - 145 |
| Stem-loop(if miRNA) |
--GA C A U U CAU ---------A U CAAAUUUGAUUUCUGUUUGCUC CAGGGA GAGGCAG GCA GGG AGGGGGC CAAC GAA UC G |||||| ||||||| ||| ||| ||||||| |||| ||| || C GUCCCU CUCCGUC CGU CCC UCCCUCG GUUG CAA AC U CUCG U A C - -UU CGGACUCACA - ACCACUCAGGGAGGUAAAACAC |
| Stem-loop sequence | GACAGGGACGAGGCAGAGCAUGGGUAGGGGGCCAUCAACAGAAUUCCAAAUUUGAUUUCUGUUUGCUCGCUCACAAAAUGGAGGGACUCACCACAAACACACUCAGGCGUUGUUGCUCCCUCCCCUGCACUGCCUCUUCCCUGGCUC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001151763.1 |
|
2.5 | Zea mays Uroporphyrinogen-III synthase (LOC100278507), mRNA | NA | coding protein | psRNATarget | |||||||||
| EU974026.1 |
|
2.5 | Zea mays clone 437855 hypothetical protein mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| EZ109415.1 |
|
3.0 | TSA: Zea mays contig45074, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| EU967881.1 |
|
3.0 | Zea mays clone 306802 protein tyrosine phosphatase-like protein PTPLB mRNA, complete cds | NA | coding protein | psRNATarget |
| 1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |