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BaseInfo

ncRNA ID	zma-miR159d-3p
Species	Zea mays
Class	miRNA
Genome position	chr8:26822638-26822854 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	178 - CUUGGAUUGAAGGGAGCUCCU - 198
Stem-loop(if miRNA)	--    -   UGCC  UC  UC  A                  UC  G         ----       CUG AG  G    U     G      -CUCU       CAAU   CG   AAGA AGA    GA  GA  GA GAGCUCCCUUCGAUCCAA  CA GAGGGAAAG    UGGUCGG   C  CU CCGG UCAUG AUACCU     GGUGCAG    GGC  A   |||| |||    ||  ||  || ||||||||||||||||||  || |||||||||    |||||||   |  || |||| ||||| ||||||     |||||||    |||   UUCU UCU    CU  CU  CU CUCGAGGGAAGUUAGGUU  GU CUCCCUUUC    ACCAGCC   G  GA GGCC AGUAC UGUGGG     UCACGUC    UCG  G UA    C   ----  CU  CU  C                  -C  G         UACU       -AA CA  G    C     G      UACGU       -CAC   UA
Stem-loop sequence	AAGAAGAUGCCGAUCGAUCGAAGAGCUCCCUUCGAUCCAAUCCAGGAGGGAAAGUGGUCGGCUGCAGCUGCCGGUUCAUGGAUACCUCUCUGGUGCAGCAAUGGCCGAGAUGCUCACCUGCACUUGCAUGGGUGUGCAUGACCCGGGAGACGAACCGACCAUCAUCUUUCCCUCGUGCUUGGAUUGAAGGGAGCUCCUCUCUCUCUCUCUCUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HQ858750.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:977   UGGAGCUCCCUUCACUCCAAG   997 Target Full Sequence	1.5	Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT063828.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:1102   UGGAGCUCCCUUCACUCCAAG   1122 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds	NA	coding protein	psRNATarget
EU970886.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:1195   UGGAGCUCCCUUCACUCCAAG   1215 Target Full Sequence	1.5	Zea mays clone 353123 transcription factor GAMYB mRNA, complete cds	NA	coding protein	psRNATarget
BT062692.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:1241   UGGAGCUCCCUUCACUCCAAG   1261 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137160.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:1268   UGGAGCUCCCUUCACUCCAAG   1288 Target Full Sequence	1.5	Zea mays MYBGA transcription factor (LOC100191731), mRNA	NA	coding protein	psRNATarget
BT033925.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:1268   UGGAGCUCCCUUCACUCCAAG   1288 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673816.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *|||||||||||||*|||||| targets:1370   UGGAGCUCCCUUCACUCCAAG   1390 Target Full Sequence	1.5	PREDICTED: Zea mays MYBGA transcription factor (LOC100191731), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB169126.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   =|||||*|||||||=|||||| targets:8   GGGAGCACCCUUCAGUCCAAG   28 Target Full Sequence	2.5	Sequence 6790 from Patent EP2559767	NA	coding protein	psRNATarget
HI408665.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   =|||||*|||||||=|||||| targets:8   GGGAGCACCCUUCAGUCCAAG   28 Target Full Sequence	2.5	Sequence 6790 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240795.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   =|||||*|||||||=|||||| targets:8   GGGAGCACCCUUCAGUCCAAG   28 Target Full Sequence	2.5	Sequence 6790 from Patent EP2985353	NA	coding protein	psRNATarget
EU968889.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   |*|||||||||||=||||||* targets:80   AAGAGCUCCCUUCGAUCCAAU   100 Target Full Sequence	2.5	Zea mays clone 324744 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958700.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   |*|||||||||||=||||||* targets:96   AAGAGCUCCCUUCGAUCCAAU   116 Target Full Sequence	2.5	Zea mays clone 1710224 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958546.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   |*|||||||||||=||||||* targets:96   AAGAGCUCCCUUCGAUCCAAU   116 Target Full Sequence	2.5	Zea mays clone 1701645 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968724.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   |*|||||||||||=||||||* targets:121   AAGAGCUCCCUUCGAUCCAAU   141 Target Full Sequence	2.5	Zea mays clone 323714 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
KJ727532.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *||||||||||||||*||||* targets:869   UGGAGCUCCCUUCAAACCAAU   889 Target Full Sequence	2.5	Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001148578.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *||||||||||||||*||||* targets:1044   UGGAGCUCCCUUCAAACCAAU   1064 Target Full Sequence	2.5	Zea mays putative MYB DNA-binding domain superfamily protein (MYB129), mRNA	NA	coding protein	psRNATarget
BT042537.1	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *||||||||||||||*||||* targets:1044   UGGAGCUCCCUUCAAACCAAU   1064 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666784.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *||||||||||||||*||||* targets:1403   UGGAGCUCCCUUCAAACCAAU   1423 Target Full Sequence	2.5	PREDICTED: Zea mays protein rough sheath 2-like (LOC103643621), mRNA	NA	coding protein	psRNATarget
XM_008683317.2	ncRNA:21   UCCUCGAGGGAAGUUAGGUUC   1   *||||||||||||||*||||* targets:1472   UGGAGCUCCCUUCAAACCAAU   1492 Target Full Sequence	2.5	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (MYB129), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).