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BaseInfo

ncRNA ID zma-miR159d-5p
Species Zea mays
Class miRNA
Genome position chr8:26822638-26822854 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 23 - GAGCUCCCUUCGAUCCAAUCC - 43
Stem-loop(if miRNA) --    -   UGCC  UC  UC  A                  UC  G         ----       CUG AG  G    U     G      -CUCU       CAAU   CG
  AAGA AGA    GA  GA  GA GAGCUCCCUUCGAUCCAA  CA GAGGGAAAG    UGGUCGG   C  CU CCGG UCAUG AUACCU     GGUGCAG    GGC  A
  |||| |||    ||  ||  || ||||||||||||||||||  || |||||||||    |||||||   |  || |||| ||||| ||||||     |||||||    |||
  UUCU UCU    CU  CU  CU CUCGAGGGAAGUUAGGUU  GU CUCCCUUUC    ACCAGCC   G  GA GGCC AGUAC UGUGGG     UCACGUC    UCG  G
UA    C   ----  CU  CU  C                  -C  G         UACU       -AA CA  G    C     G      UACGU       -CAC   UA
Stem-loop sequence AAGAAGAUGCCGAUCGAUCGAAGAGCUCCCUUCGAUCCAAUCCAGGAGGGAAAGUGGUCGGCUGCAGCUGCCGGUUCAUGGAUACCUCUCUGGUGCAGCAAUGGCCGAGAUGCUCACCUGCACUUGCAUGGGUGUGCAUGACCCGGGAGACGAACCGACCAUCAUCUUUCCCUCGUGCUUGGAUUGAAGGGAGCUCCUCUCUCUCUCUCUCUCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235256.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:170   UGUUUGGAUUGAAGGGAGCUC   190

2.5 Sequence 1251 from Patent EP2985353 NA coding protein psRNATarget
JB163893.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:170   UGUUUGGAUUGAAGGGAGCUC   190

2.5 Sequence 1557 from Patent EP2559767 NA coding protein psRNATarget
HI403126.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:170   UGUUUGGAUUGAAGGGAGCUC   190

2.5 Sequence 1251 from Patent EP2074227 NA coding protein psRNATarget
JB163587.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:170   UGUUUGGAUUGAAGGGAGCUC   190

2.5 Sequence 1251 from Patent EP2559767 NA coding protein psRNATarget
LQ235562.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:170   UGUUUGGAUUGAAGGGAGCUC   190

2.5 Sequence 1557 from Patent EP2985353 NA coding protein psRNATarget
HI403432.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:170   UGUUUGGAUUGAAGGGAGCUC   190

2.5 Sequence 1557 from Patent EP2074227 NA coding protein psRNATarget
EU968889.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:235   UGCUUGGAUUGAAGGGAGCUC   255

2.5 Zea mays clone 324744 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU958700.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:251   UGCUUGGAUUGAAGGGAGCUC   271

2.5 Zea mays clone 1710224 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU958546.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:251   UGCUUGGAUUGAAGGGAGCUC   271

2.5 Zea mays clone 1701645 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968724.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|*||||||=|||||||||||
targets:276   UGCUUGGAUUGAAGGGAGCUC   296

2.5 Zea mays clone 323714 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI408967.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:197   UCUUUGGAUUGAAGGGAGCUC   217

2.5 Sequence 7092 from Patent EP2074227 NA coding protein psRNATarget
LQ241097.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:197   UCUUUGGAUUGAAGGGAGCUC   217

2.5 Sequence 7092 from Patent EP2985353 NA coding protein psRNATarget
JB169428.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:197   UCUUUGGAUUGAAGGGAGCUC   217

2.5 Sequence 7092 from Patent EP2559767 NA coding protein psRNATarget
HI408561.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:202   UCUUUGGAUUGAAGGGAGCUC   222

2.5 Sequence 6686 from Patent EP2074227 NA coding protein psRNATarget
LQ240691.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:202   UCUUUGGAUUGAAGGGAGCUC   222

2.5 Sequence 6686 from Patent EP2985353 NA coding protein psRNATarget
JB169022.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:202   UCUUUGGAUUGAAGGGAGCUC   222

2.5 Sequence 6686 from Patent EP2559767 NA coding protein psRNATarget
NM_001327981.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:495   UCUUUGGAUUGAAGGGAGCUC   515

2.5 Zea mays uncharacterized LOC100192882 (cl16330_1), transcript variant 1, mRNA NA coding protein psRNATarget
EU955086.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:493   UCUUUGGAUUGAAGGGAGCUC   513

2.5 Zea mays clone 1509037 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT034981.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:469   UCUUUGGAUUGAAGGGAGCUC   489

2.5 Zea mays full-length cDNA clone ZM_BFb0030N13 mRNA, complete cds NA coding protein psRNATarget
NM_001138070.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:469   UCUUUGGAUUGAAGGGAGCUC   489

2.5 Zea mays uncharacterized LOC100192882 (cl16330_1), mRNA NA coding protein psRNATarget
EU953334.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  ***||||||=|||||||||||
targets:487   UCUUUGGAUUGAAGGGAGCUC   507

2.5 Zea mays clone 1399743 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020546009.1
ncRNA:21   CCUAACCUAGCUUCCCUCGAG   1
  *|||*||||||||||*|||||
targets:263   AGAUCGGAUCGAAGGUAGCUC   283

2.5 PREDICTED: Zea mays homeobox-leucine zipper protein ROC7 (LOC103641332), transcript variant X2, mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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