Search result

BaseInfo

ncRNA ID	zma-miR319d-3p
Species	Zea mays
Class	miRNA
Genome position	chr8:26767956-26768167 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	20 - UUGGACUGAAGGGUGCUCCC - 39
Stem-loop(if miRNA)	----------U   CGCCGGCCGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAGGGGCGGUGCUAGGGUCGGAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAAC            GGU                                                                                                G            |||            CCU                                                                                                G UUUGUUCCUUU   AGCCUCCCUCGUGGGAAGUCAGGUUCGUUUCUGCCACGCUCUAGCUUCGAAAAUGGAGGGCGAAGUAAGUGAGUAGACGCUUCGAGCAAAGGUACC
Stem-loop sequence	UGGUCGCCGGCCGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAGGGGCGGUGCUAGGGUCGGAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAACGGCCAUGGAAACGAGCUUCGCAGAUGAGUGAAUGAAGCGGGAGGUAAAAGCUUCGAUCUCGCACCGUCUUUGCUUGGACUGAAGGGUGCUCCCUCCGAUCCUUUCCUUGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240795.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   |||||||||||||||||||| targets:8   GGGAGCACCCUUCAGUCCAA   27 Target Full Sequence	0.0	Sequence 6790 from Patent EP2985353	NA	coding protein	psRNATarget
JB169126.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   |||||||||||||||||||| targets:8   GGGAGCACCCUUCAGUCCAA   27 Target Full Sequence	0.0	Sequence 6790 from Patent EP2559767	NA	coding protein	psRNATarget
HI408665.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   |||||||||||||||||||| targets:8   GGGAGCACCCUUCAGUCCAA   27 Target Full Sequence	0.0	Sequence 6790 from Patent EP2074227	NA	coding protein	psRNATarget
BT038569.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*||||||||||||| targets:1140   UGGAGCCCCCUUCAGUCCAA   1159 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0287F20 mRNA, complete cds	NA	coding protein	psRNATarget
EU973271.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*||||||||||||| targets:1292   UGGAGCCCCCUUCAGUCCAA   1311 Target Full Sequence	1.0	Zea mays clone 395942 transcription factor GAMYB mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254909.2	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*||||||||||||| targets:1360   UGGAGCCCCCUUCAGUCCAA   1379 Target Full Sequence	1.0	Zea mays transcription factor GAMYB (LOC100285651), mRNA	NA	coding protein	psRNATarget
BT069226.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*||||||||||||| targets:1358   UGGAGCCCCCUUCAGUCCAA   1377 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0370J04 mRNA, complete cds	NA	coding protein	psRNATarget
BT065979.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*||||||||||||| targets:1976   UGGAGCCCCCUUCAGUCCAA   1995 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0129D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542180.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*||||||||||||| targets:2019   UGGAGCCCCCUUCAGUCCAA   2038 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor GAMYB (LOC100285651), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655165.2	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *||=||||*||||||||||| targets:1046   CGGGGCACACUUCAGUCCAA   1065 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor PCF8 (LOC103633471), mRNA	NA	coding protein	psRNATarget
XM_008661531.2	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   **||||*||||||||||||| targets:933   UCGAGCUCCCUUCAGUCCAA   952 Target Full Sequence	2.0	PREDICTED: Zea mays myb-related protein Pp2 (LOC103638691), mRNA	NA	coding protein	psRNATarget
EU972820.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   **||||*||||||||||||| targets:926   UCGAGCUCCCUUCAGUCCAA   945 Target Full Sequence	2.0	Zea mays clone 388684 mRNA sequence	NA	coding protein	psRNATarget
HQ858750.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:977   UGGAGCUCCCUUCACUCCAA   996 Target Full Sequence	2.5	Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT063828.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1102   UGGAGCUCCCUUCACUCCAA   1121 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds	NA	coding protein	psRNATarget
EU970886.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1195   UGGAGCUCCCUUCACUCCAA   1214 Target Full Sequence	2.5	Zea mays clone 353123 transcription factor GAMYB mRNA, complete cds	NA	coding protein	psRNATarget
BT062692.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1241   UGGAGCUCCCUUCACUCCAA   1260 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds	NA	coding protein	psRNATarget
BT033925.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1268   UGGAGCUCCCUUCACUCCAA   1287 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137160.1	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1268   UGGAGCUCCCUUCACUCCAA   1287 Target Full Sequence	2.5	Zea mays MYBGA transcription factor (LOC100191731), mRNA	NA	coding protein	psRNATarget
XM_008673816.2	ncRNA:20   CCCUCGUGGGAAGUCAGGUU   1   *|||||*|||||||*||||| targets:1370   UGGAGCUCCCUUCACUCCAA   1389 Target Full Sequence	2.5	PREDICTED: Zea mays MYBGA transcription factor (LOC100191731), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).