Search result

BaseInfo

ncRNA ID	zma-miR319d-5p
Species	Zea mays
Class	miRNA
Genome position	chr8:26767956-26768167 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	171 - AGAGCGUCCUUCAGUCCACUC - 191
Stem-loop(if miRNA)	----------U   CGCCGGCCGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAGGGGCGGUGCUAGGGUCGGAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAAC            GGU                                                                                                G            |||            CCU                                                                                                G UUUGUUCCUUU   AGCCUCCCUCGUGGGAAGUCAGGUUCGUUUCUGCCACGCUCUAGCUUCGAAAAUGGAGGGCGAAGUAAGUGAGUAGACGCUUCGAGCAAAGGUACC
Stem-loop sequence	UGGUCGCCGGCCGGAUGGAAGAGAGCGUCCUUCAGUCCACUCAGGGGCGGUGCUAGGGUCGGAUUAGCUGCCGACUCAUUCACCCACAUGCCAAGCAAACGGCCAUGGAAACGAGCUUCGCAGAUGAGUGAAUGAAGCGGGAGGUAAAAGCUUCGAUCUCGCACCGUCUUUGCUUGGACUGAAGGGUGCUCCCUCCGAUCCUUUCCUUGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI408665.1	ncRNA:21   CUCACCUGACUUCCUGCGAGA   1   ||||||||||||||||||||| targets:159   GAGUGGACUGAAGGACGCUCU   179 Target Full Sequence	0.0	Sequence 6790 from Patent EP2074227	NA	coding protein	psRNATarget
JB169126.1	ncRNA:21   CUCACCUGACUUCCUGCGAGA   1   ||||||||||||||||||||| targets:159   GAGUGGACUGAAGGACGCUCU   179 Target Full Sequence	0.0	Sequence 6790 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240795.1	ncRNA:21   CUCACCUGACUUCCUGCGAGA   1   ||||||||||||||||||||| targets:159   GAGUGGACUGAAGGACGCUCU   179 Target Full Sequence	0.0	Sequence 6790 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).