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BaseInfo

ncRNA ID	zma-miR159k-5p
Species	Zea mays
Class	miRNA
Genome position	chr8:10585048-10585247 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - GUGCUCCCUUCAAACCAAUAA - 22
Stem-loop(if miRNA)	--  U           A    UAAA        CU  -U   -    A  A  G    U     GUUC    UGU         UCAGAGAGAGAGAAGA  GUGAGAGA   GG GCUCCCUUCAA CCAA    CGGUCGAU  GA  GGG UGGU CA CU CUCG UCAUG    CCAC   CCCAUCUCA                UC        G   || ||||||||||| ||||    ||||||||  ||  ||| |||| || || |||| |||||    ||||   |||||||||                ||   UC CGAGGGAAGUU GGUU    GCCAGUUG  CU  CCC GCUA GU GA GAGC AGUAC    GGUG   GGGUAGAGU                UC        C CG  U           A    UGUC        --  UC   U    C  C  G    C     GUUU    UUC         ----------------  GUAGAGAG
Stem-loop sequence	GGUGCUCCCUUCAAACCAAUAAACGGUCGAUCUGAUGGGUGGUACAACUGCUCGUUCAUGGUUCCCACUGUCCCAUCUCAUCAGAGAGAGAGAAGAUCGUGAGAGAGCGAGAGAUGCUUGAGAUGGGCUUGUGGUUUGCAUGACCGAGGAGCUGCAUCGUCCCCUUCGUUGACCGCUGUUUGGAUUGAAGGGAGCUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT040489.1	ncRNA:21   AAUAACCAAACUUCCCUCGUG   1   |*||||*||||||||||*||| targets:660   UGAUUGUUUUGAAGGGAACAC   680 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0096K12 mRNA, complete cds	NA	coding protein	psRNATarget
BT039246.1	ncRNA:21   AAUAACCAAACUUCCCUCGUG   1   |*||||*||||||||||*||| targets:667   UGAUUGUUUUGAAGGGAACAC   687 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147174.1	ncRNA:21   AAUAACCAAACUUCCCUCGUG   1   |*||||*||||||||||*||| targets:667   UGAUUGUUUUGAAGGGAACAC   687 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272721 (pco068984(32)), mRNA	NA	coding protein	psRNATarget
BT087608.1	ncRNA:21   AAUAACCAAACUUCCCUCGUG   1   |*||||*||||||||||*||| targets:794   UGAUUGUUUUGAAGGGAACAC   814 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0129I16 mRNA, complete cds	NA	coding protein	psRNATarget
EU962746.1	ncRNA:21   AAUAACCAAACUUCCCUCGUG   1   |*||||*||||||||||*||| targets:824   UGAUUGUUUUGAAGGGAACAC   844 Target Full Sequence	2.5	Zea mays clone 245158 mRNA sequence	NA	coding protein	psRNATarget
AY106166.1	ncRNA:21   AAUAACCAAACUUCCCUCGUG   1   |*||||*||||||||||*||| targets:886   UGAUUGUUUUGAAGGGAACAC   906 Target Full Sequence	2.5	Zea mays PCO068984 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).