Search result

BaseInfo

ncRNA ID	zma-miR159h-3p
Species	Zea mays
Class	miRNA
Genome position	chr8:10528867-10529066 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	179 - UUUGGAGUGAAGGGAGCUCUG - 199
Stem-loop(if miRNA)	--  U           A    UAAA        CU  -U   -   UA     G    U     GUUC    UGU         UCAGAGAGAGAGAAGA  GUGAGAGA   GG GCUCCCUUCAC CCAA    CGGUCGAU  GA  GGG UGG  CAGCU CUCG UCAUG    CCAC   CCCAUCUCA                UC        G   || ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||                ||   UC CGAGGGAAGUG GGUU    GCCAGUUG  CU  CCC GCU  GUCGA GAGC AGUAC    GGUG   GGGUAGAGU                UC        C CG  U           A    UGUC        --  UC   U   CC     G    C     GUUU    UUC         ----------------  GUAGAGAG
Stem-loop sequence	GGUGCUCCCUUCACACCAAUAAACGGUCGAUCUGAUGGGUGGUACAGCUGCUCGUUCAUGGUUCCCACUGUCCCAUCUCAUCAGAGAGAGAGAAGAUCGUGAGAGAGCGAGAGAUGCUUGAGAUGGGCUUGUGGUUUGCAUGACCGAGGAGCUGCCUCGUCCCCUUCGUUGACCGCUGUUUGGAGUGAAGGGAGCUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HQ858750.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:977   UGGAGCUCCCUUCACUCCAAG   997 Target Full Sequence	1.0	Zea mays clone UT1459 MYBGA transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT063828.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:1102   UGGAGCUCCCUUCACUCCAAG   1122 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0110K24 mRNA, complete cds	NA	coding protein	psRNATarget
EU970886.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:1195   UGGAGCUCCCUUCACUCCAAG   1215 Target Full Sequence	1.0	Zea mays clone 353123 transcription factor GAMYB mRNA, complete cds	NA	coding protein	psRNATarget
BT062692.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:1241   UGGAGCUCCCUUCACUCCAAG   1261 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0334D20 mRNA, complete cds	NA	coding protein	psRNATarget
BT033925.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:1268   UGGAGCUCCCUUCACUCCAAG   1288 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044D10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137160.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:1268   UGGAGCUCCCUUCACUCCAAG   1288 Target Full Sequence	1.0	Zea mays MYBGA transcription factor (LOC100191731), mRNA	NA	coding protein	psRNATarget
XM_008673816.2	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||||||||||||||||= targets:1370   UGGAGCUCCCUUCACUCCAAG   1390 Target Full Sequence	1.0	PREDICTED: Zea mays MYBGA transcription factor (LOC100191731), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669847.2	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ||||||*||||||||*||||| targets:179   CAGAGCCCCCUUCACACCAAA   199 Target Full Sequence	2.5	PREDICTED: Zea mays SNF4 (LOC100284094), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547778.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ||||||*||||||||*||||| targets:179   CAGAGCCCCCUUCACACCAAA   199 Target Full Sequence	2.5	PREDICTED: Zea mays SNF4 (LOC100284094), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008669846.2	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ||||||*||||||||*||||| targets:179   CAGAGCCCCCUUCACACCAAA   199 Target Full Sequence	2.5	PREDICTED: Zea mays SNF4 (LOC100284094), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT038569.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||*|||||||*|||||| targets:1140   UGGAGCCCCCUUCAGUCCAAA   1160 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0287F20 mRNA, complete cds	NA	coding protein	psRNATarget
EU973271.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||*|||||||*|||||| targets:1292   UGGAGCCCCCUUCAGUCCAAA   1312 Target Full Sequence	2.5	Zea mays clone 395942 transcription factor GAMYB mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254909.2	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||*|||||||*|||||| targets:1360   UGGAGCCCCCUUCAGUCCAAA   1380 Target Full Sequence	2.5	Zea mays transcription factor GAMYB (LOC100285651), mRNA	NA	coding protein	psRNATarget
BT069226.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||*|||||||*|||||| targets:1358   UGGAGCCCCCUUCAGUCCAAA   1378 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0370J04 mRNA, complete cds	NA	coding protein	psRNATarget
BT065979.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||*|||||||*|||||| targets:1976   UGGAGCCCCCUUCAGUCCAAA   1996 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0129D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542180.1	ncRNA:21   GUCUCGAGGGAAGUGAGGUUU   1   ==||||*|||||||*|||||| targets:2019   UGGAGCCCCCUUCAGUCCAAA   2039 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor GAMYB (LOC100285651), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).