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BaseInfo

ncRNA ID zma-miR159h-5p
Species Zea mays
Class miRNA
Genome position chr8:10528867-10529066 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 2 - GUGCUCCCUUCACACCAAUAA - 22
Stem-loop(if miRNA) --  U           A    UAAA        CU  -U   -   UA     G    U     GUUC    UGU         UCAGAGAGAGAGAAGA  GUGAGAGA
  GG GCUCCCUUCAC CCAA    CGGUCGAU  GA  GGG UGG  CAGCU CUCG UCAUG    CCAC   CCCAUCUCA                UC        G
  || ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||                ||
  UC CGAGGGAAGUG GGUU    GCCAGUUG  CU  CCC GCU  GUCGA GAGC AGUAC    GGUG   GGGUAGAGU                UC        C
CG  U           A    UGUC        --  UC   U   CC     G    C     GUUU    UUC         ----------------  GUAGAGAG
Stem-loop sequence GGUGCUCCCUUCACACCAAUAAACGGUCGAUCUGAUGGGUGGUACAGCUGCUCGUUCAUGGUUCCCACUGUCCCAUCUCAUCAGAGAGAGAGAAGAUCGUGAGAGAGCGAGAGAUGCUUGAGAUGGGCUUGUGGUUUGCAUGACCGAGGAGCUGCCUCGUCCCCUUCGUUGACCGCUGUUUGGAGUGAAGGGAGCUCUGC

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).