ncRNA ID | zma-miR159h-5p |
Species | Zea mays |
Class | miRNA |
Genome position | chr8:10528867-10529066 [+] |
Reference genome | RefGen_v2 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 2 - GUGCUCCCUUCACACCAAUAA - 22 |
Stem-loop(if miRNA) |
--  U           A    UAAA        CU  -U   -   UA     G    U     GUUC    UGU         UCAGAGAGAGAGAAGA  GUGAGAGA   GG GCUCCCUUCAC CCAA    CGGUCGAU  GA  GGG UGG  CAGCU CUCG UCAUG    CCAC   CCCAUCUCA                UC        G   || ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||                ||   UC CGAGGGAAGUG GGUU    GCCAGUUG  CU  CCC GCU  GUCGA GAGC AGUAC    GGUG   GGGUAGAGU                UC        C CG  U           A    UGUC        --  UC   U   CC     G    C     GUUU    UUC         ----------------  GUAGAGAG |
Stem-loop sequence | GGUGCUCCCUUCACACCAAUAAACGGUCGAUCUGAUGGGUGGUACAGCUGCUCGUUCAUGGUUCCCACUGUCCCAUCUCAUCAGAGAGAGAGAAGAUCGUGAGAGAGCGAGAGAUGCUUGAGAUGGGCUUGUGGUUUGCAUGACCGAGGAGCUGCCUCGUCCCCUUCGUUGACCGCUGUUUGGAGUGAAGGGAGCUCUGC |
1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |