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BaseInfo

ncRNA ID	zma-miR164d-3p
Species	Zea mays
Class	miRNA
Genome position	chr7:172723300-172723515 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	20 - CACGUGGUCUCCUUCUCCAU - 39
Stem-loop(if miRNA)	U            -  ACGC        C   G       A     AUAC  CA      -  CUCUCCUCUCCACCACUACUGCAUCUAGCUAUCUCCAUGGAUGGAUGU  GAGUGAGAAGGA CC    UGGAGAAG AGG CACGUGC UGCAC    GC  UUCUCG AU                                                A  |||||||||||| ||    |||||||| ||| ||||||| |||||    ||  |||||| ||  UUCACUCUUUCU GG    ACCUCUUC UCU GUGCACG ACGUG    UC  GGUCGU CG                                                C C            U  CACU        C   G       C     ----  --      A  UACUCGAGCGAUCGAAUAACGAAGAGGCUAGCUAGGUCAGGCUCGAUG
Stem-loop sequence	UGAGUGAGAAGGACCACGCUGGAGAAGCAGGGCACGUGCAUGCACAUACGCCAUUCUCGAUCUCUCCUCUCCACCACUACUGCAUCUAGCUAUCUCCAUGGAUGGAUGUACGUAGCUCGGACUGGAUCGAUCGGAGAAGCAAUAAGCUAGCGAGCUCAUGCAUGCUGGCUGUGCACGCACGUGGUCUCCUUCUCCAUCACGGUUCUUUCUCACUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403144.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235583.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1578 from Patent EP2985353	NA	coding protein	psRNATarget
HI403413.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1538 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235274.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1269 from Patent EP2985353	NA	coding protein	psRNATarget
HI403453.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1578 from Patent EP2074227	NA	coding protein	psRNATarget
HI403111.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1236 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235543.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1538 from Patent EP2985353	NA	coding protein	psRNATarget
JB163605.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235241.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1236 from Patent EP2985353	NA	coding protein	psRNATarget
JB163874.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1538 from Patent EP2559767	NA	coding protein	psRNATarget
JB163914.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1578 from Patent EP2559767	NA	coding protein	psRNATarget
JB163572.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   |||||||||||||||||||| targets:9   AUGGAGAAGGAGACCACGUG   28 Target Full Sequence	0.0	Sequence 1236 from Patent EP2559767	NA	coding protein	psRNATarget
BT084081.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   ||||||||||||*||||||* targets:665   AUGGAGAAGGAGCCCACGUU   684 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0071O04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177202.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   ||||||||||||*||||||* targets:665   AUGGAGAAGGAGCCCACGUU   684 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100384735), mRNA	NA	coding protein	psRNATarget
EZ051639.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:36   CAGGAGAAGGAGACCACGGG   55 Target Full Sequence	2.5	TSA: Zea mays contig52759, mRNA sequence	NA	coding protein	psRNATarget
BT037380.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:570   CAGGAGAAGGAGACCACGGG   589 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0167A13 mRNA, complete cds	NA	coding protein	psRNATarget
BT035673.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:583   CAGGAGAAGGAGACCACGGG   602 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0076F06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137433.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:556   CAGGAGAAGGAGACCACGGG   575 Target Full Sequence	2.5	Zea mays non-intrinsic ABC protein 4 (AY111142), mRNA	NA	coding protein	psRNATarget
BT034284.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:556   CAGGAGAAGGAGACCACGGG   575 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009M16 mRNA, complete cds	NA	coding protein	psRNATarget
EU966833.1	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:579   CAGGAGAAGGAGACCACGGG   598 Target Full Sequence	2.5	Zea mays clone 297644 adaptin ear-binding coat-associated protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682783.2	ncRNA:20   UACCUCUUCCUCUGGUGCAC   1   **||||||||||||||||*| targets:689   CAGGAGAAGGAGACCACGGG   708 Target Full Sequence	2.5	PREDICTED: Zea mays non-intrinsic ABC protein 4 (AY111142), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).