Search result

BaseInfo

ncRNA ID zma-miR156j-3p
Species Zea mays
Class miRNA
Genome position chr7:130652700-130652824 [-]
Reference genome RefGen_v2
Source miRBase
Length 23
Mature sequence(if miRNA) 18 - UGCUCUCUGCUCUCACUGUCAUC - 40
Stem-loop(if miRNA) --  A    A   CG  A          -A    -          --A   -A   CC       A
  CG GUGG CCU  GG GCGAUGACAG  AGAG AGAGAGCACA   CCC  GCA  AGCGAGG A
  || |||| |||  || ||||||||||  |||| ||||||||||   |||  |||  ||||||| A
  GC CACC GGA  CC CGCUACUGUC  UCUC UCUCUCGUGU   GGG  CGU  UCGCUCC A
AA  -    -   CA  -          AC    G          GCC   AG   CU       G
Stem-loop sequence CGAGUGGACCUCGGGAGCGAUGACAGAAGAGAGAGAGCACAACCCAGCACCAGCGAGGAAAAGCCUCGCUUCUGCGAGGGCCGUGUGCUCUCUGCUCUCACUGUCAUCGCCCACAGGCCACCGAA

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).