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BaseInfo

ncRNA ID zma-miR156j-5p
Species Zea mays
Class miRNA
Genome position chr7:130652700-130652824 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 85 - UGACAGAAGAGAGAGAGCACA - 105
Stem-loop(if miRNA) --  A    A   CG  A          -A    -          --A   -A   CC       A
  CG GUGG CCU  GG GCGAUGACAG  AGAG AGAGAGCACA   CCC  GCA  AGCGAGG A
  || |||| |||  || ||||||||||  |||| ||||||||||   |||  |||  ||||||| A
  GC CACC GGA  CC CGCUACUGUC  UCUC UCUCUCGUGU   GGG  CGU  UCGCUCC A
AA  -    -   CA  -          AC    G          GCC   AG   CU       G
Stem-loop sequence CGAGUGGACCUCGGGAGCGAUGACAGAAGAGAGAGAGCACAACCCAGCACCAGCGAGGAAAAGCCUCGCUUCUGCGAGGGCCGUGUGCUCUCUGCUCUCACUGUCAUCGCCCACAGGCCACCGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HQ858690.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:754   UGUGCUCUCUCUCUUCUGUCA   774

0.0 Zea mays clone UT1146 SBP transcription factor mRNA, partial cds NA coding protein psRNATarget
EU947023.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:283   UGUGCUCUCUCUCUUCUGUCA   303

0.0 Zea mays clone 326226 mRNA sequence NA coding protein psRNATarget
HQ858679.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:763   UGUGCUCUCUCUCUUCUGUCA   783

0.0 Zea mays clone UT1135 SBP transcription factor mRNA, partial cds NA coding protein psRNATarget
KJ726823.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:778   UGUGCUCUCUCUCUUCUGUCA   798

0.0 Zea mays clone pUT3362 SBP transcription factor (SBP23) mRNA, partial cds NA coding protein psRNATarget
NM_001143577.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:590   UGUGCUCUCUCUCUUCUGUCA   610

0.0 Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100217221), mRNA NA coding protein psRNATarget
BT038156.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:590   UGUGCUCUCUCUCUUCUGUCA   610

0.0 Zea mays full-length cDNA clone ZM_BFb0214P19 mRNA, complete cds NA coding protein psRNATarget
BT065275.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:906   UGUGCUCUCUCUCUUCUGUCA   926

0.0 Zea mays full-length cDNA clone ZM_BFb0077F03 mRNA, complete cds NA coding protein psRNATarget
KJ726820.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:811   UGUGCUCUCUCUCUUCUGUCA   831

0.0 Zea mays clone pUT3359 SBP transcription factor (SBP8) mRNA, partial cds NA coding protein psRNATarget
AJ011619.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:558   UGUGCUCUCUCUCUUCUGUCA   578

0.0 Zea mays mRNA for SBP-domain protein 6, partial NA coding protein psRNATarget
EU970791.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:586   UGUGCUCUCUCUCUUCUGUCA   606

0.0 Zea mays clone 350913 mRNA sequence NA coding protein psRNATarget
BT064694.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:894   UGUGCUCUCUCUCUUCUGUCA   914

0.0 Zea mays full-length cDNA clone ZM_BFb0036O07 mRNA, complete cds NA coding protein psRNATarget
AJ011618.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:594   UGUGCUCUCUCUCUUCUGUCA   614

0.0 Zea mays mRNA for SBP-domain protein 5, partial NA coding protein psRNATarget
XM_020543213.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:787   UGUGCUCUCUCUCUUCUGUCA   807

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 2 (LOC103637478), mRNA NA coding protein psRNATarget
XM_008678828.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:876   UGUGCUCUCUCUCUUCUGUCA   896

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001151973.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:954   UGUGCUCUCUCUCUUCUGUCA   974

0.0 Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), mRNA NA coding protein psRNATarget
EU975549.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:954   UGUGCUCUCUCUCUUCUGUCA   974

0.0 Zea mays clone 492287 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
KU131572.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:999   UGUGCUCUCUCUCUUCUGUCA   1019

0.0 Zea mays cultivar B73 squamosa promoter binding-like protein (Tga1) mRNA, complete cds NA coding protein psRNATarget
XM_008678827.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:900   UGUGCUCUCUCUCUUCUGUCA   920

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X2, mRNA NA coding protein psRNATarget
KU131571.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1013   UGUGCUCUCUCUCUUCUGUCA   1033

0.0 Zea mays cultivar B73 squamosa promoter binding-like protein (Not1) mRNA, complete cds NA coding protein psRNATarget
XM_008678826.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:934   UGUGCUCUCUCUCUUCUGUCA   954

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100278824), transcript variant X1, mRNA NA coding protein psRNATarget
AY883560.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:992   UGUGCUCUCUCUCUUCUGUCA   1012

0.0 Zea mays cultivar inbred line W22 teosinte glume architecture 1 (tga1) mRNA, complete cds NA coding protein psRNATarget
EU972995.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:917   UGUGCUCUCUCUCUUCUGUCA   937

0.0 Zea mays clone 391427 squamosa promoter-binding-like protein 9 mRNA, complete cds NA coding protein psRNATarget
BT041777.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:928   UGUGCUCUCUCUCUUCUGUCA   948

0.0 Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds NA coding protein psRNATarget
NM_001143473.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:931   UGUGCUCUCUCUCUUCUGUCA   951

0.0 Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP23), mRNA NA coding protein psRNATarget
BT037938.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:931   UGUGCUCUCUCUCUUCUGUCA   951

0.0 Zea mays full-length cDNA clone ZM_BFb0203K20 mRNA, complete cds NA coding protein psRNATarget
NM_001308478.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1054   UGUGCUCUCUCUCUUCUGUCA   1074

0.0 Zea mays squamosa promoter-binding-like protein 17 (LOC542666), mRNA NA coding protein psRNATarget
BT054334.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1054   UGUGCUCUCUCUCUUCUGUCA   1074

0.0 Zea mays full-length cDNA clone ZM_BFb0338P09 mRNA, complete cds NA coding protein psRNATarget
NM_001301523.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1054   UGUGCUCUCUCUCUUCUGUCA   1074

0.0 Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), mRNA NA coding protein psRNATarget
BT084089.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1045   UGUGCUCUCUCUCUUCUGUCA   1065

0.0 Zea mays full-length cDNA clone ZM_BFb0073B10 mRNA, complete cds NA coding protein psRNATarget
EU964361.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1202   UGUGCUCUCUCUCUUCUGUCA   1222

0.0 Zea mays clone 278288 mRNA sequence NA coding protein psRNATarget
XM_008680176.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1247   UGUGCUCUCUCUCUUCUGUCA   1267

0.0 PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653214), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008681329.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1359   UGUGCUCUCUCUCUUCUGUCA   1379

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008681327.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1362   UGUGCUCUCUCUCUUCUGUCA   1382

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008681328.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1362   UGUGCUCUCUCUCUUCUGUCA   1382

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008665371.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1407   UGUGCUCUCUCUCUUCUGUCA   1427

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008665363.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1410   UGUGCUCUCUCUCUUCUGUCA   1430

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008680174.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1585   UGUGCUCUCUCUCUUCUGUCA   1605

0.0 PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653213), mRNA NA coding protein psRNATarget
BT053875.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1561   UGUGCUCUCUCUCUUCUGUCA   1581

0.0 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds NA coding protein psRNATarget
NM_001152261.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1561   UGUGCUCUCUCUCUUCUGUCA   1581

0.0 Zea mays Squamosa promoter-binding-like protein 6 (LOC100279240), mRNA NA coding protein psRNATarget
XM_008652792.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1970   UGUGCUCUCUCUCUUCUGUCA   1990

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100217221), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669545.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:1844   UGUGCUCUCUCUCUUCUGUCA   1864

0.0 PREDICTED: Zea mays Squamosa promoter-binding-like protein 6 (LOC100279240), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676419.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||||||||||||||||
targets:2220   UGUGCUCUCUCUCUUCUGUCA   2240

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 2 (LOC103650833), mRNA NA coding protein psRNATarget
EZ086842.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:42   CGUGCUCUCUCUCUUCUGUCA   62

0.0 TSA: Zea mays contig22488, mRNA sequence NA coding protein psRNATarget
AY107331.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:126   CGUGCUCUCUCUCUUCUGUCA   146

0.0 Zea mays PCO114323 mRNA sequence NA coding protein psRNATarget
JC611929.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:631   GGUGCUCUCUCUCUUCUGUCA   651

0.0 Sequence 91 from Patent WO2014106838 NA coding protein psRNATarget
XM_008682670.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:373   CGUGCUCUCUCUCUUCUGUCA   393

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (LOC103656018), mRNA NA coding protein psRNATarget
HQ858696.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:631   GGUGCUCUCUCUCUUCUGUCA   651

0.0 Zea mays clone UT1152 SBP transcription factor mRNA, partial cds NA coding protein psRNATarget
BT088183.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:825   CGUGCUCUCUCUCUUCUGUCA   845

0.0 Zea mays full-length cDNA clone ZM_BFc0047E05 mRNA, complete cds NA coding protein psRNATarget
KJ727979.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1069   CGUGCUCUCUCUCUUCUGUCA   1089

0.0 Zea mays clone pUT6094 SBP transcription factor (SBP25) mRNA, partial cds NA coding protein psRNATarget
NM_001318379.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:740   GGUGCUCUCUCUCUUCUGUCA   760

0.0 Zea mays Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279436), mRNA NA coding protein psRNATarget
KJ727943.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1123   CGUGCUCUCUCUCUUCUGUCA   1143

0.0 Zea mays clone pUT6039 SBP transcription factor (SBP20) mRNA, partial cds NA coding protein psRNATarget
EU964656.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:762   GGUGCUCUCUCUCUUCUGUCA   782

0.0 Zea mays clone 280651 mRNA sequence NA coding protein psRNATarget
NM_001138620.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:946   CGUGCUCUCUCUCUUCUGUCA   966

0.0 Zea mays Squamosa promoter-binding-like protein 2 (pco114323), mRNA NA coding protein psRNATarget
BT035779.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:946   CGUGCUCUCUCUCUUCUGUCA   966

0.0 Zea mays full-length cDNA clone ZM_BFb0083B18 mRNA, complete cds NA coding protein psRNATarget
XM_008678337.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:854   CGUGCUCUCUCUCUUCUGUCA   874

0.0 PREDICTED: Zea mays Squamosa promoter-binding-like protein 2 (pco114323), transcript variant X1, mRNA NA coding protein psRNATarget
BT054238.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:888   GGUGCUCUCUCUCUUCUGUCA   908

0.0 Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds NA coding protein psRNATarget
EU965000.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:959   CGUGCUCUCUCUCUUCUGUCA   979

0.0 Zea mays clone 283067 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008645498.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1251   CGUGCUCUCUCUCUUCUGUCA   1271

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X4, mRNA NA coding protein psRNATarget
BT039521.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1227   CGUGCUCUCUCUCUUCUGUCA   1247

0.0 Zea mays full-length cDNA clone ZM_BFc0017D10 mRNA, complete cds NA coding protein psRNATarget
XM_008645221.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1251   CGUGCUCUCUCUCUUCUGUCA   1271

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008645496.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1352   CGUGCUCUCUCUCUUCUGUCA   1372

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X2, mRNA NA coding protein psRNATarget
EU969824.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1352   CGUGCUCUCUCUCUUCUGUCA   1372

0.0 Zea mays clone 336108 squamosa promoter-binding-like protein 11 mRNA, complete cds NA coding protein psRNATarget
EU963637.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1401   CGUGCUCUCUCUCUUCUGUCA   1421

0.0 Zea mays clone 265056 squamosa promoter-binding-like protein 11 mRNA, complete cds NA coding protein psRNATarget
NM_001156062.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1401   CGUGCUCUCUCUCUUCUGUCA   1421

0.0 Zea mays squamosa promoter-binding-like protein 11 (SBP25), mRNA NA coding protein psRNATarget
XM_008645497.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1417   CGUGCUCUCUCUCUUCUGUCA   1437

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020553266.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1363   CGUGCUCUCUCUCUUCUGUCA   1383

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645218.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1372   CGUGCUCUCUCUCUUCUGUCA   1392

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X2, mRNA NA coding protein psRNATarget
EU973300.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1461   CGUGCUCUCUCUCUUCUGUCA   1481

0.0 Zea mays clone 396397 mRNA sequence NA coding protein psRNATarget
XM_008679336.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1310   CGUGCUCUCUCUCUUCUGUCA   1330

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679338.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1341   CGUGCUCUCUCUCUUCUGUCA   1361

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008679337.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1362   CGUGCUCUCUCUCUUCUGUCA   1382

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), transcript variant X2, mRNA NA coding protein psRNATarget
BT039945.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1525   CGUGCUCUCUCUCUUCUGUCA   1545

0.0 Zea mays full-length cDNA clone ZM_BFc0054D09 mRNA, complete cds NA coding protein psRNATarget
XM_020553268.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1560   CGUGCUCUCUCUCUUCUGUCA   1580

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008645495.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1668   CGUGCUCUCUCUCUUCUGUCA   1688

0.0 PREDICTED: Zea mays squamosa promoter-binding-like protein 11 (SBP25), transcript variant X1, mRNA NA coding protein psRNATarget
EU957096.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1373   CGUGCUCUCUCUCUUCUGUCA   1393

0.0 Zea mays clone 1582615 mRNA sequence NA coding protein psRNATarget
NM_001152255.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1686   CGUGCUCUCUCUCUUCUGUCA   1706

0.0 Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), mRNA NA coding protein psRNATarget
BT053864.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1686   CGUGCUCUCUCUCUUCUGUCA   1706

0.0 Zea mays full-length cDNA clone ZM_BFb0339F10 mRNA, complete cds NA coding protein psRNATarget
BT064560.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1575   CGUGCUCUCUCUCUUCUGUCA   1595

0.0 Zea mays full-length cDNA clone ZM_BFc0183C18 mRNA, complete cds NA coding protein psRNATarget
BT064536.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1620   CGUGCUCUCUCUCUUCUGUCA   1640

0.0 Zea mays full-length cDNA clone ZM_BFc0178N24 mRNA, complete cds NA coding protein psRNATarget
NM_001175227.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1620   CGUGCUCUCUCUCUUCUGUCA   1640

0.0 Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP20), mRNA NA coding protein psRNATarget
NM_001175355.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1612   CGUGCUCUCUCUCUUCUGUCA   1632

0.0 Zea mays uncharacterized LOC100382631 (LOC100382631), mRNA NA coding protein psRNATarget
BT064918.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:1612   CGUGCUCUCUCUCUUCUGUCA   1632

0.0 Zea mays full-length cDNA clone ZM_BFc0014E19 mRNA, complete cds NA coding protein psRNATarget
XM_020553267.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  *||||||||||||||||||||
targets:2001   CGUGCUCUCUCUCUUCUGUCA   2021

0.0 PREDICTED: Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279234), transcript variant X3, mRNA NA coding protein psRNATarget
HI408583.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:73   UGUGCUCACUCUCUUCUGUCA   93

1.0 Sequence 6708 from Patent EP2074227 NA coding protein psRNATarget
LQ240713.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:73   UGUGCUCACUCUCUUCUGUCA   93

1.0 Sequence 6708 from Patent EP2985353 NA coding protein psRNATarget
JB169044.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  |||||||*|||||||||||||
targets:73   UGUGCUCACUCUCUUCUGUCA   93

1.0 Sequence 6708 from Patent EP2559767 NA coding protein psRNATarget
NM_001321489.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:592   CAUGCUCUCUCUCUUCUGUCA   612

0.0 Zea mays uncharacterized LOC107436005 (LOC107436005), mRNA NA coding protein psRNATarget
AY103643.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:316   CAUGCUCUCUCUCUUCUGUCA   336

0.0 Zea mays PCO133434 mRNA sequence NA coding protein psRNATarget
HQ858786.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:739   CAUGCUCUCUCUCUUCUGUCA   759

0.0 Zea mays clone UT1800 SBP transcription factor mRNA, partial cds NA coding protein psRNATarget
NM_001156764.2
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:723   CAUGCUCUCUCUCUUCUGUCA   743

0.0 Zea mays uncharacterized LOC100283866 (pco133434), mRNA NA coding protein psRNATarget
EU966210.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:724   CAUGCUCUCUCUCUUCUGUCA   744

0.0 Zea mays clone 292600 SBP domain containing protein mRNA, complete cds NA coding protein psRNATarget
BT087508.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:814   CAUGCUCUCUCUCUUCUGUCA   834

0.0 Zea mays full-length cDNA clone ZM_BFb0098L17 mRNA, complete cds NA coding protein psRNATarget
BT033415.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:839   CAUGCUCUCUCUCUUCUGUCA   859

0.0 Zea mays full-length cDNA clone ZM_BFb0223G18 mRNA, complete cds NA coding protein psRNATarget
NM_001136780.1
ncRNA:21   ACACGAGAGAGAGAAGACAGU   1
  **|||||||||||||||||||
targets:839   CAUGCUCUCUCUCUUCUGUCA   859

0.0 Zea mays SBP transcription factor (SBP12), mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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