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BaseInfo

ncRNA ID	zma-miR166j-3p
Species	Zea mays
Class	miRNA
Genome position	chr7:124539680-124539833 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	115 - UCGGACCAGGCUUCAAUCCCU - 135
Stem-loop(if miRNA)	CAAGU  A    -UA          U   UUU         A         CACA     GAAA       ---UC  CUUG      UG AGAU   GGUUAAGGGG UUG   GUCUGGUUC AGGUCGCCA    GCAGG    ACCCAUU     GC    A      || ||||   |||||||||| |||   ||||||||| |||||||||    |||||    |||||||     ||      AC UCUG   UCAAUUUCCC AAC   CGGACCAGG UCUAGUGGU    UGUCC    UGGGUAG     CG    A --UAU  G    CGA          U   -UU         C         ----     -AUG       UACCA  UACG
Stem-loop sequence	CAAGUUGAAGAUUAGGUUAAGGGGUUUGUUUGUCUGGUUCAAGGUCGCCACACAGCAGGGAAAACCCAUUUCGCCUUGAAGCAUGCACCAUGAUGGGUGUACCUGUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACUAGCGUCUGCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT056134.2	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   ||||||||||||||||||||| targets:1599   AGGGAUUGAAGCCUGGUCCGA   1619 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds	NA	coding protein	psRNATarget
BT056134.2	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =*|||*|||=||||||||||| targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153310.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   ||||||||||||||||||||| targets:1599   AGGGAUUGAAGCCUGGUCCGA   1619 Target Full Sequence	0.0	Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA	NA	coding protein	psRNATarget
NM_001153310.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =*|||*|||=||||||||||| targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887 Target Full Sequence	2.5	Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA	NA	coding protein	psRNATarget
JB163701.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1365 from Patent EP2559767	NA	coding protein	psRNATarget
HI403240.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1365 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235370.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1365 from Patent EP2985353	NA	coding protein	psRNATarget
HI402941.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1066 from Patent EP2074227	NA	coding protein	psRNATarget
JB163402.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1066 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235071.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1066 from Patent EP2985353	NA	coding protein	psRNATarget
JB163644.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1308 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235238.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1233 from Patent EP2985353	NA	coding protein	psRNATarget
HI403183.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1308 from Patent EP2074227	NA	coding protein	psRNATarget
JB169124.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 6788 from Patent EP2559767	NA	coding protein	psRNATarget
JB163948.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1612 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235540.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1535 from Patent EP2985353	NA	coding protein	psRNATarget
HI403410.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235617.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1612 from Patent EP2985353	NA	coding protein	psRNATarget
HI403487.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1612 from Patent EP2074227	NA	coding protein	psRNATarget
JB163871.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1535 from Patent EP2559767	NA	coding protein	psRNATarget
JB163569.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1233 from Patent EP2559767	NA	coding protein	psRNATarget
HI408663.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 6788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240793.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 6788 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235313.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1308 from Patent EP2985353	NA	coding protein	psRNATarget
HI403108.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1233 from Patent EP2074227	NA	coding protein	psRNATarget
JB163904.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1568 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235265.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1260 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235573.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1568 from Patent EP2985353	NA	coding protein	psRNATarget
HI403443.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1568 from Patent EP2074227	NA	coding protein	psRNATarget
HI403135.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1260 from Patent EP2074227	NA	coding protein	psRNATarget
JB163596.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1260 from Patent EP2559767	NA	coding protein	psRNATarget
HI403131.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1256 from Patent EP2074227	NA	coding protein	psRNATarget
JB163592.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1256 from Patent EP2559767	NA	coding protein	psRNATarget
HI403437.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1562 from Patent EP2074227	NA	coding protein	psRNATarget
JB163898.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1562 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235567.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1562 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235261.1	ncRNA:21   UCCCUAACUUCGGACCAGGCU   1   =||||*||||||||||||||| targets:11   GGGGAAUGAAGCCUGGUCCGA   31 Target Full Sequence	1.0	Sequence 1256 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).