ncRNA ID | zma-miR166j-5p |
Species | Zea mays |
Class | miRNA |
Genome position | chr7:124539680-124539833 [+] |
Reference genome | RefGen_v2 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 23 - GGUUUGUUUGUCUGGUUCAAGG - 44 |
Stem-loop(if miRNA) |
CAAGU  A    -UA          U   UUU         A         CACA     GAAA       ---UC  CUUG      UG AGAU   GGUUAAGGGG UUG   GUCUGGUUC AGGUCGCCA    GCAGG    ACCCAUU     GC    A      || ||||   |||||||||| |||   ||||||||| |||||||||    |||||    |||||||     ||      AC UCUG   UCAAUUUCCC AAC   CGGACCAGG UCUAGUGGU    UGUCC    UGGGUAG     CG    A --UAU  G    CGA          U   -UU         C         ----     -AUG       UACCA  UACG |
Stem-loop sequence | CAAGUUGAAGAUUAGGUUAAGGGGUUUGUUUGUCUGGUUCAAGGUCGCCACACAGCAGGGAAAACCCAUUUCGCCUUGAAGCAUGCACCAUGAUGGGUGUACCUGUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACUAGCGUCUGCAUAU |
1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |