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BaseInfo

ncRNA ID zma-miR166j-5p
Species Zea mays
Class miRNA
Genome position chr7:124539680-124539833 [+]
Reference genome RefGen_v2
Source miRBase
Length 22
Mature sequence(if miRNA) 23 - GGUUUGUUUGUCUGGUUCAAGG - 44
Stem-loop(if miRNA) CAAGU  A    -UA          U   UUU         A         CACA     GAAA       ---UC  CUUG
     UG AGAU   GGUUAAGGGG UUG   GUCUGGUUC AGGUCGCCA    GCAGG    ACCCAUU     GC    A
     || ||||   |||||||||| |||   ||||||||| |||||||||    |||||    |||||||     ||
     AC UCUG   UCAAUUUCCC AAC   CGGACCAGG UCUAGUGGU    UGUCC    UGGGUAG     CG    A
--UAU  G    CGA          U   -UU         C         ----     -AUG       UACCA  UACG
Stem-loop sequence CAAGUUGAAGAUUAGGUUAAGGGGUUUGUUUGUCUGGUUCAAGGUCGCCACACAGCAGGGAAAACCCAUUUCGCCUUGAAGCAUGCACCAUGAUGGGUGUACCUGUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACUAGCGUCUGCAUAU

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).