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BaseInfo

ncRNA ID	zma-miR171g-3p
Species	Zea mays
Class	miRNA
Genome position	chr7:42481791-42481902 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	20 - GAGGUGAGCCGAGCCAAUAUC - 40
Stem-loop(if miRNA)	AGA   --  GC       CA        A              CG  CA   CA AA    ACG  AG  GACAUGG  UGGUAUUG CUUGGCUCAUCUCU  CC  CAC  G  U    |||  ||  |||||||  |||||||| ||||||||||||||  ||  |||  |    UGC  UC  CUGUACU  ACUAUAAC GAGCCGAGUGGAGG  GG  GUG  C  C ---   GA  UA       UC        C              -A  CC   AA AC
Stem-loop sequence	AGAACGAGGCGACAUGGCAUGGUAUUGACUUGGCUCAUCUCUCGCCCACACCAGAAUCCACAAGUGCCGGAGGAGGUGAGCCGAGCCAAUAUCACUUCAUGUCAUCUAGCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ244578.1	ncRNA:21   CUAUAACCGAGCCGAGUGGAG   1   *=||*|||||*|||||||||| targets:116   CGUAGUGGCUGGGCUCACCUC   136 Target Full Sequence	2.5	Zea mays clone 9380 mRNA sequence	NA	coding protein	psRNATarget
AY105962.1	ncRNA:21   CUAUAACCGAGCCGAGUGGAG   1   *=||*|||||*|||||||||| targets:326   CGUAGUGGCUGGGCUCACCUC   346 Target Full Sequence	2.5	Zea mays PCO079729 mRNA sequence	NA	coding protein	psRNATarget
NM_001291611.1	ncRNA:21   CUAUAACCGAGCCGAGUGGAG   1   *=||*|||||*|||||||||| targets:262   CGUAGUGGCUGGGCUCACCUC   282 Target Full Sequence	2.5	Zea mays LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (pco079729(552)), mRNA	NA	coding protein	psRNATarget
BT063764.1	ncRNA:21   CUAUAACCGAGCCGAGUGGAG   1   *=||*|||||*|||||||||| targets:262   CGUAGUGGCUGGGCUCACCUC   282 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0104L23 mRNA, complete cds	NA	coding protein	psRNATarget
EU967364.1	ncRNA:21   CUAUAACCGAGCCGAGUGGAG   1   *=||*|||||*|||||||||| targets:223   CGUAGUGGCUGGGCUCACCUC   243 Target Full Sequence	2.5	Zea mays clone 302052 mRNA sequence	NA	coding protein	psRNATarget
EU961547.1	ncRNA:21   CUAUAACCGAGCCGAGUGGAG   1   *=||*|||||*|||||||||| targets:294   CGUAGUGGCUGGGCUCACCUC   314 Target Full Sequence	2.5	Zea mays clone 236422 GPI-anchored protein mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).