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BaseInfo

ncRNA ID zma-miR171g-5p
Species Zea mays
Class miRNA
Genome position chr7:42481791-42481902 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 70 - UAUUGACUUGGCUCAUCUCUC - 90
Stem-loop(if miRNA) AGA   --  GC       CA        A              CG  CA   CA AA
   ACG  AG  GACAUGG  UGGUAUUG CUUGGCUCAUCUCU  CC  CAC  G  U
   |||  ||  |||||||  |||||||| ||||||||||||||  ||  |||  |
   UGC  UC  CUGUACU  ACUAUAAC GAGCCGAGUGGAGG  GG  GUG  C  C
---   GA  UA       UC        C              -A  CC   AA AC
Stem-loop sequence AGAACGAGGCGACAUGGCAUGGUAUUGACUUGGCUCAUCUCUCGCCCACACCAGAAUCCACAAGUGCCGGAGGAGGUGAGCCGAGCCAAUAUCACUUCAUGUCAUCUAGCGU

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).