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BaseInfo

ncRNA ID	zma-miR172d-3p
Species	Zea mays
Class	miRNA
Genome position	chr6:167813975-167814048 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	54 - AGAAUCUUGAUGAUGCUGCA - 73
Stem-loop(if miRNA)	C           A    - -C  -  U G GUGCAGCA CAUCAAGAUUC CAUC C  CA GC C A |||||||| ||||||||||| |||| |  || || | U UACGUCGU GUAGUUCUAAG GUAG G  GU CG G C         A           A    A UA  A  U U
Stem-loop sequence	GUGCAGCACCAUCAAGAUUCACAUCCCCAGCUCGAUCUGUGCAUGAUGAGAUGAGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098913.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:35   UGCAGCAUCAUCAGGAUUCU   54 Target Full Sequence	1.5	TSA: Zea mays contig34568, mRNA sequence	NA	coding protein	psRNATarget
EU957755.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:400   UGCAGCAUCAUCAGGAUUCU   419 Target Full Sequence	1.5	Zea mays clone 1614286 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU951778.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:65   UGCAGCAUCAUCAGGAUUCU   84 Target Full Sequence	1.5	Zea mays clone 999960 mRNA sequence	NA	coding protein	psRNATarget
KJ727838.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1191   UGCAGCAUCAUCAGGAUUCU   1210 Target Full Sequence	1.5	Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds	NA	coding protein	psRNATarget
KJ726939.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1467   UGCAGCAUCAUCAGGAUUCU   1486 Target Full Sequence	1.5	Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds	NA	coding protein	psRNATarget
FJ686697.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1450   UGCAGCAUCAUCAGGAUUCU   1469 Target Full Sequence	1.5	Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds	NA	coding protein	psRNATarget
EU974186.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1450   UGCAGCAUCAUCAGGAUUCU   1469 Target Full Sequence	1.5	Zea mays clone 442332 floral homeotic protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088249.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1425   UGCAGCAUCAUCAGGAUUCU   1444 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds	NA	coding protein	psRNATarget
AY110208.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1528   UGCAGCAUCAUCAGGAUUCU   1547 Target Full Sequence	1.5	Zea mays CL1812_1 mRNA sequence	NA	coding protein	psRNATarget
AF048900.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1528   UGCAGCAUCAUCAGGAUUCU   1547 Target Full Sequence	1.5	Zea mays indeterminate spikelet 1 (ids1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146067.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1498   UGCAGCAUCAUCAGGAUUCU   1517 Target Full Sequence	1.5	Zea mays sister of indeterminate spikelet 1 (sid1), mRNA	NA	coding protein	psRNATarget
BT063357.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1498   UGCAGCAUCAUCAGGAUUCU   1517 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0055O08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111434.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1535   UGCAGCAUCAUCAGGAUUCU   1554 Target Full Sequence	1.5	Zea mays indeterminate spikelet 1 (ids1), mRNA	NA	coding protein	psRNATarget
XM_008649847.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1604   UGCAGCAUCAUCAGGAUUCU   1623 Target Full Sequence	1.5	PREDICTED: Zea mays indeterminate spikelet 1 (ids1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652800.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1564   UGCAGCAUCAUCAGGAUUCU   1583 Target Full Sequence	1.5	PREDICTED: Zea mays sister of indeterminate spikelet 1 (sid1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001328266.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1873   UGCAGCAUCAUCAGGAUUCU   1892 Target Full Sequence	1.5	Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), mRNA	NA	coding protein	psRNATarget
XM_020539160.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1961   UGCAGCAUCAUCAGGAUUCU   1980 Target Full Sequence	1.5	PREDICTED: Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658315.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1860   UGCAGCAUCAUCAGGAUUCU   1879 Target Full Sequence	1.5	PREDICTED: Zea mays floral homeotic protein APETALA 2 (LOC103635944), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650369.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:2005   UGCAGCAUCAUCAGGAUUCU   2024 Target Full Sequence	1.5	PREDICTED: Zea mays AP2-like ethylene-responsive transcription factor TOE3 (LOC103629196), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658314.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||| targets:1892   UGCAGCAUCAUCAGGAUUCU   1911 Target Full Sequence	1.5	PREDICTED: Zea mays floral homeotic protein APETALA 2 (LOC103635944), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001254783.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1513   UGCAGCAUCAUCAGGAUUCC   1532 Target Full Sequence	2.5	Zea mays glossy15 (gl15), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT040346.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1513   UGCAGCAUCAUCAGGAUUCC   1532 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds	NA	coding protein	psRNATarget
EU957469.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1597   UGCAGCAUCAUCAGGAUUCC   1616 Target Full Sequence	2.5	Zea mays clone 1593578 mRNA sequence	NA	coding protein	psRNATarget
U41466.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1653   UGCAGCAUCAUCAGGAUUCC   1672 Target Full Sequence	2.5	Zea mays Glossy15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660825.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1762   UGCAGCAUCAUCAGGAUUCC   1781 Target Full Sequence	2.5	PREDICTED: Zea mays glossy15 (gl15), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660824.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||=|||||* targets:1771   UGCAGCAUCAUCAGGAUUCC   1790 Target Full Sequence	2.5	PREDICTED: Zea mays glossy15 (gl15), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235226.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1221 from Patent EP2985353	NA	coding protein	psRNATarget
HI403397.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1522 from Patent EP2074227	NA	coding protein	psRNATarget
HI403096.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1221 from Patent EP2074227	NA	coding protein	psRNATarget
JB163557.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1221 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235527.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1522 from Patent EP2985353	NA	coding protein	psRNATarget
JB163858.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 1522 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241077.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 7072 from Patent EP2985353	NA	coding protein	psRNATarget
JB169408.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 7072 from Patent EP2559767	NA	coding protein	psRNATarget
HI408947.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:12   UGCAGCACCAUCAAGAUUCA   31 Target Full Sequence	2.5	Sequence 7072 from Patent EP2074227	NA	coding protein	psRNATarget
KJ727553.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:693   UGCAGCAUCAUCACGAUUCC   712 Target Full Sequence	2.5	Zea mays clone pUT5413 AP2-EREBP transcription factor (EREB212) mRNA, partial cds	NA	coding protein	psRNATarget
EU945504.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||*|||||||||||* targets:1003   UGCAGCACCAUCAAGAUUCA   1022 Target Full Sequence	2.5	Zea mays clone 275445 mRNA sequence	NA	coding protein	psRNATarget
NM_001174720.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:898   UGCAGCAUCAUCACGAUUCC   917 Target Full Sequence	2.5	Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), mRNA	NA	coding protein	psRNATarget
BT062696.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:898   UGCAGCAUCAUCACGAUUCC   917 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0334I17 mRNA, complete cds	NA	coding protein	psRNATarget
EU947402.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:542   UGCAGCAUCAUCACGAUUCC   561 Target Full Sequence	2.5	Zea mays clone 342363 mRNA sequence	NA	coding protein	psRNATarget
BT060890.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:901   UGCAGCAUCAUCACGAUUCC   920 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0066G16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545131.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1106   UGCAGCAUCAUCACGAUUCC   1125 Target Full Sequence	2.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663895.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1441   UGCAGCAUCAUCACGAUUCC   1460 Target Full Sequence	2.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB212), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT056188.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1557   UGCAGCAUCAUCACGAUUCC   1576 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153337.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1557   UGCAGCAUCAUCACGAUUCC   1576 Target Full Sequence	2.5	Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), mRNA	NA	coding protein	psRNATarget
XM_008669654.2	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1828   UGCAGCAUCAUCACGAUUCC   1847 Target Full Sequence	2.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020547687.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1946   UGCAGCAUCAUCACGAUUCC   1965 Target Full Sequence	2.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547686.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1949   UGCAGCAUCAUCACGAUUCC   1968 Target Full Sequence	2.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547685.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   |||||||||||||*|||||* targets:1952   UGCAGCAUCAUCACGAUUCC   1971 Target Full Sequence	2.5	PREDICTED: Zea mays putative AP2/EREBP transcription factor superfamily protein (EREB197), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163541.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:9   CGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1205 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235510.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:9   CGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1505 from Patent EP2985353	NA	coding protein	psRNATarget
HI403080.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:9   CGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1205 from Patent EP2074227	NA	coding protein	psRNATarget
JB163841.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:9   CGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1505 from Patent EP2559767	NA	coding protein	psRNATarget
HI403380.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:9   CGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1505 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235210.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:9   CGUGGCAUCAUCAAGAUUCA   28 Target Full Sequence	3.0	Sequence 1205 from Patent EP2985353	NA	coding protein	psRNATarget
JA894830.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:22   AGUGGCAUCAUCAAGAUUCA   41 Target Full Sequence	3.0	Sequence 147 from Patent WO2011067745	NA	coding protein	psRNATarget
NM_001151781.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:382   AGUGGCAUCAUCAAGAUUCA   401 Target Full Sequence	3.0	Zea mays uncharacterized LOC100278541 (LOC100278541), mRNA	NA	coding protein	psRNATarget
EU974220.1	ncRNA:20   ACGUCGUAGUAGUUCUAAGA   1   *|==|||||||||||||||* targets:382   AGUGGCAUCAUCAAGAUUCA   401 Target Full Sequence	3.0	Zea mays clone 443205 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).