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BaseInfo

ncRNA ID	zma-miR399c-3p
Species	Zea mays
Class	miRNA
Genome position	chr6:159694634-159694840 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	168 - UGCCAAAGGAGAAUUGCCCUG - 188
Stem-loop(if miRNA)	UGC         -AU    UA       CG             A   -GA    ACACAUCAUC G - GAGAGAGUAAGCUCGCUGCGUGCUCGCCGGCCUGGGAGCGG    UUGCUGAGC   GAAU  CAGGGUA  UCUCCUUUGGCAC GCA   AUGC          A U C                                         A    |||||||||   ||||  |||||||  ||||||||||||| |||   ||||          | | |                                         A    AGCGACUCG   CUUA  GUCCCGU  AGAGGAAACCGUG CGU   UAUG          C G C                                         G --U         GAU    GC       UA             -   AUA    ---------C - U GACGACAAGUACGUAGACGUGGCGGCGGUAAACCGGACGCU
Stem-loop sequence	UGCUUGCUGAGCAUGAAUUACAGGGUACGUCUCCUUUGGCACAGCAGAAUGCACACAUCAUCAGUCGAGAGAGUAAGCUCGCUGCGUGCUCGCCGGCCUGGGAGCGGAAGUCGCAGGCCAAAUGGCGGCGGUGCAGAUGCAUGAACAGCAGCUGCCGUAUAUAUGCGUGCCAAAGGAGAAUUGCCCUGCGAUUCUAGGCUCAGCGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163901.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	1.5	Sequence 1565 from Patent EP2559767	NA	coding protein	psRNATarget
JB163593.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	1.5	Sequence 1257 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235570.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	1.5	Sequence 1565 from Patent EP2985353	NA	coding protein	psRNATarget
HI403132.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	1.5	Sequence 1257 from Patent EP2074227	NA	coding protein	psRNATarget
HI403440.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	1.5	Sequence 1565 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235262.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   ||||||||*|||||||||||| targets:11   CAGGGCAACUCUCCUUUGGCA   31 Target Full Sequence	1.5	Sequence 1257 from Patent EP2985353	NA	coding protein	psRNATarget
EU949059.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |||||||=*|||||||||||| targets:71   CAGGGCAGCUCUCCUUUGGCA   91 Target Full Sequence	2.5	Zea mays clone 394906 mRNA sequence	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:255   UAGGGCAAAUCUCCUUUGGCA   275 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*|||=||||||||||||||| targets:652   CUGGGUAAUUCUCCUUUGGCA   672 Target Full Sequence	1.0	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:474   GGGGGCAAAUCUCCUUUGGCA   494 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:432   CUGGGCAAAUCUCCUUUGGCA   452 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:565   UCGGGCAAAUCUCCUUUGGCA   585 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =|||||||*|||||||||||| targets:1159   UAGGGCAAAUCUCCUUUGGCA   1179 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*|||=||||||||||||||| targets:1556   CUGGGUAAUUCUCCUUUGGCA   1576 Target Full Sequence	1.0	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   *=||||||*|||||||||||| targets:1378   GGGGGCAAAUCUCCUUUGGCA   1398 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   |*||||||*|||||||||||| targets:1336   CUGGGCAAAUCUCCUUUGGCA   1356 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:21   GUCCCGUUAAGAGGAAACCGU   1   =*||||||*|||||||||||| targets:1469   UCGGGCAAAUCUCCUUUGGCA   1489 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).