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BaseInfo

ncRNA ID	zma-miR399c-5p
Species	Zea mays
Class	miRNA
Genome position	chr6:159694634-159694840 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	23 - GGGUACGUCUCCUUUGGCACA - 43
Stem-loop(if miRNA)	UGC         -AU    UA       CG             A   -GA    ACACAUCAUC G - GAGAGAGUAAGCUCGCUGCGUGCUCGCCGGCCUGGGAGCGG    UUGCUGAGC   GAAU  CAGGGUA  UCUCCUUUGGCAC GCA   AUGC          A U C                                         A    |||||||||   ||||  |||||||  ||||||||||||| |||   ||||          | | |                                         A    AGCGACUCG   CUUA  GUCCCGU  AGAGGAAACCGUG CGU   UAUG          C G C                                         G --U         GAU    GC       UA             -   AUA    ---------C - U GACGACAAGUACGUAGACGUGGCGGCGGUAAACCGGACGCU
Stem-loop sequence	UGCUUGCUGAGCAUGAAUUACAGGGUACGUCUCCUUUGGCACAGCAGAAUGCACACAUCAUCAGUCGAGAGAGUAAGCUCGCUGCGUGCUCGCCGGCCUGGGAGCGGAAGUCGCAGGCCAAAUGGCGGCGGUGCAGAUGCAUGAACAGCAGCUGCCGUAUAUAUGCGUGCCAAAGGAGAAUUGCCCUGCGAUUCUAGGCUCAGCGAU

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).