| ncRNA ID | zma-miR164c-3p |
| Species | Zea mays |
| Class | miRNA |
| Genome position | chr6:153356824-153357093 [-] |
| Reference genome | RefGen_v2 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 16 - CAUGUGCCCUUCUUCUCCAUC - 36 |
| Stem-loop(if miRNA) |
U C G C U UU C - U AGCG -- -- -G - GCAGUCACGCGUACGUCGCCUGAGCGGCGCGCGCGAGAGAGAGAGAC GGCGAGGUG GC CGGUGGAGAAG AGGGCACGUGCAU C UC GUCG CCGGCCGGCU GGC GCCG GCGGC CCG CUC UC A ||||||||| || ||||||||||| ||||||||||||| | || |||| |||||||||| ||| |||| ||||| ||| ||| || CCGCUCCGC CG GCUACCUCUUC UCCCGUGUACGUG G AG UAGC GGCCGGCCGG CCG CCGA GACCG CCA GUC UC C U A G U C -U C C - ---A CC AC AA U GAUCGACGACGUGGACGUGGUCAAUCGGCGCGGCCGCUGCUGGACGG |
| Stem-loop sequence | UGGCGAGGUGCGCGCGGUGGAGAAGCAGGGCACGUGCAUUCUUUCCGUCGCCGGCCGGCUUGGCAGCGGCCGGCGGCCCGGCUCUCGCAGUCACGCGUACGUCGCCUGAGCGGCGCGCGCGAGAGAGAGAGACACGGCAGGUCGUCGCCGGCGCGGCUAACUGGUGCAGGUGCAGCAGCUAGCUUCUGAAACCCAGCCAGCCAGCCAGCCGGCCGGCCGGCCGAUCGAUGCGUGCAUGUGCCCUUCUUCUCCAUCGGGCACGCCUCGCCU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| BT085137.1 |
|
2.5 | Zea mays full-length cDNA clone ZM_BFb0301B11 mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001150497.2 |
|
2.5 | Zea mays hypothetical protein (LOC100276786), mRNA | NA | coding protein | psRNATarget | |||||||||
| EU964692.1 |
|
2.5 | Zea mays clone 280880 hypothetical protein mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| XM_020547598.1 |
|
2.5 | PREDICTED: Zea mays hypothetical protein (LOC100276786), transcript variant X1, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |