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BaseInfo

ncRNA ID	zma-miR164c-5p
Species	Zea mays
Class	miRNA
Genome position	chr6:153356824-153357093 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	233 - UGGAGAAGCAGGGCACGUGCA - 253
Stem-loop(if miRNA)	U         C  G           C             U UU  C    -          U   AGCG    --     --   -G   -  GCAGUCACGCGUACGUCGCCUGAGCGGCGCGCGCGAGAGAGAGAGAC  GGCGAGGUG GC CGGUGGAGAAG AGGGCACGUGCAU C  UC GUCG CCGGCCGGCU GGC    GCCG  GCGGC  CCG  CUC UC                                               A  ||||||||| || ||||||||||| ||||||||||||| |  || |||| |||||||||| |||    ||||  |||||  |||  ||| ||  CCGCUCCGC CG GCUACCUCUUC UCCCGUGUACGUG G  AG UAGC GGCCGGCCGG CCG    CCGA  GACCG  CCA  GUC UC                                               C U         A  G           U             C -U  C    C          -   ---A    CC     AC   AA   U  GAUCGACGACGUGGACGUGGUCAAUCGGCGCGGCCGCUGCUGGACGG
Stem-loop sequence	UGGCGAGGUGCGCGCGGUGGAGAAGCAGGGCACGUGCAUUCUUUCCGUCGCCGGCCGGCUUGGCAGCGGCCGGCGGCCCGGCUCUCGCAGUCACGCGUACGUCGCCUGAGCGGCGCGCGCGAGAGAGAGAGACACGGCAGGUCGUCGCCGGCGCGGCUAACUGGUGCAGGUGCAGCAGCUAGCUUCUGAAACCCAGCCAGCCAGCCAGCCGGCCGGCCGGCCGAUCGAUGCGUGCAUGUGCCCUUCUUCUCCAUCGGGCACGCCUCGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403144.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235543.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1538 from Patent EP2985353	NA	coding protein	psRNATarget
HI403413.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1538 from Patent EP2074227	NA	coding protein	psRNATarget
JB163874.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1538 from Patent EP2559767	NA	coding protein	psRNATarget
JB163572.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1236 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235583.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1578 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235274.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1269 from Patent EP2985353	NA	coding protein	psRNATarget
JB163914.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1578 from Patent EP2559767	NA	coding protein	psRNATarget
JB163605.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235241.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1236 from Patent EP2985353	NA	coding protein	psRNATarget
HI403453.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1578 from Patent EP2074227	NA	coding protein	psRNATarget
HI403111.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||||||||||||||||||| targets:166   UGCACGUGCCCUGCUUCUCCA   186 Target Full Sequence	0.0	Sequence 1236 from Patent EP2074227	NA	coding protein	psRNATarget
HI410159.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||=|||||||*|||||||| targets:212   UGCAUGUGCCCUUCUUCUCCA   232 Target Full Sequence	2.5	Sequence 8284 from Patent EP2074227	NA	coding protein	psRNATarget
JB170620.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||=|||||||*|||||||| targets:212   UGCAUGUGCCCUUCUUCUCCA   232 Target Full Sequence	2.5	Sequence 8284 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242289.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   ||||=|||||||*|||||||| targets:212   UGCAUGUGCCCUUCUUCUCCA   232 Target Full Sequence	2.5	Sequence 8284 from Patent EP2985353	NA	coding protein	psRNATarget
JB163590.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||=|||||||||||| targets:102   CUCACGUGUCCUGCUUCUCCA   122 Target Full Sequence	1.5	Sequence 1254 from Patent EP2559767	NA	coding protein	psRNATarget
HI403129.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||=|||||||||||| targets:102   CUCACGUGUCCUGCUUCUCCA   122 Target Full Sequence	1.5	Sequence 1254 from Patent EP2074227	NA	coding protein	psRNATarget
JB163894.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||=|||||||||||| targets:102   CUCACGUGUCCUGCUUCUCCA   122 Target Full Sequence	1.5	Sequence 1558 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235563.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||=|||||||||||| targets:102   CUCACGUGUCCUGCUUCUCCA   122 Target Full Sequence	1.5	Sequence 1558 from Patent EP2985353	NA	coding protein	psRNATarget
HI403433.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||=|||||||||||| targets:102   CUCACGUGUCCUGCUUCUCCA   122 Target Full Sequence	1.5	Sequence 1558 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235259.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||=|||||||||||| targets:102   CUCACGUGUCCUGCUUCUCCA   122 Target Full Sequence	1.5	Sequence 1254 from Patent EP2985353	NA	coding protein	psRNATarget
KJ727847.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:755   AGCUCGUGCCCUGCUUCUCCA   775 Target Full Sequence	1.0	Zea mays clone pUT5891 NAC transcription factor (NAC119) mRNA, partial cds	NA	coding protein	psRNATarget
KJ727849.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:737   AGCUCGUGCCCUGCUUCUCCA   757 Target Full Sequence	1.0	Zea mays clone pUT5893 NAC transcription factor (NAC84) mRNA, partial cds	NA	coding protein	psRNATarget
AJ833966.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:758   AGCUCGUGCCCUGCUUCUCCA   778 Target Full Sequence	1.0	Zea mays partial mRNA for hypothetical protein (nam1 gene)	NA	coding protein	psRNATarget
AJ833967.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:737   AGCUCGUGCCCUGCUUCUCCA   757 Target Full Sequence	1.0	Zea mays partial mRNA for hypothetical protein (nam2 gene)	NA	coding protein	psRNATarget
EU970442.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:854   AGCUCGUGCCCUGCUUCUCCA   874 Target Full Sequence	1.0	Zea mays clone 345601 CUC2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301482.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:854   AGCUCGUGCCCUGCUUCUCCA   874 Target Full Sequence	1.0	Zea mays protein CUP-SHAPED COTYLEDON 1-like (CUC2), mRNA	NA	coding protein	psRNATarget
BT065512.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:785   AGCAAGUGCCCUGCUUCUCCA   805 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175536.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:785   AGCAAGUGCCCUGCUUCUCCA   805 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382839 (umc2678), mRNA	NA	coding protein	psRNATarget
XM_020553498.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:866   AGCAAGUGCCCUGCUUCUCCA   886 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382839 (umc2678), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU965374.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:930   AGCAGGUGCCCUGCUUCUCCA   950 Target Full Sequence	1.0	Zea mays clone 285645 mRNA sequence	NA	coding protein	psRNATarget
XM_008676188.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:870   AGCUCGUGCCCUGCUUCUCCA   890 Target Full Sequence	1.0	PREDICTED: Zea mays protein CUP-SHAPED COTYLEDON 1 (LOC606437), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676187.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *||*||||||||||||||||| targets:873   AGCUCGUGCCCUGCUUCUCCA   893 Target Full Sequence	1.0	PREDICTED: Zea mays protein CUP-SHAPED COTYLEDON 1 (LOC606437), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676078.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:932   AGCAGGUGCCCUGCUUCUCCA   952 Target Full Sequence	1.0	PREDICTED: Zea mays NAC domain-containing protein 21/22 (LOC103650490), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676077.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   *|||*|||||||||||||||| targets:1144   AGCAGGUGCCCUGCUUCUCCA   1164 Target Full Sequence	1.0	PREDICTED: Zea mays NAC domain-containing protein 21/22 (LOC103650490), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JX428484.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:434   CACACGUGACCUGCUUCUCCA   454 Target Full Sequence	1.5	Zea mays subsp. mays clone pUT3081 NAC30 NAC type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
KJ728021.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:722   CACACGUGACCUGCUUCUCCA   742 Target Full Sequence	1.5	Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds	NA	coding protein	psRNATarget
BT065898.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:796   CACACGUGACCUGCUUCUCCA   816 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678972.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:863   CACACGUGACCUGCUUCUCCA   883 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain protein NAC5 (NAC40), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678971.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:911   CACACGUGACCUGCUUCUCCA   931 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain protein NAC5 (NAC40), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963138.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:816   AACAGGUGCCCUGCUUCUCCA   836 Target Full Sequence	1.0	Zea mays clone 258140 mRNA sequence	NA	coding protein	psRNATarget
XM_020538576.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:861   CACACGUGACCUGCUUCUCCA   881 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020538575.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:880   CACACGUGACCUGCUUCUCCA   900 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538573.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:891   CACACGUGACCUGCUUCUCCA   911 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538574.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:909   CACACGUGACCUGCUUCUCCA   929 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956531.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:988   CACACGUGACCUGCUUCUCCA   1008 Target Full Sequence	1.5	Zea mays clone 1565606 NAC domain protein NAC5 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154298.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:988   CACACGUGACCUGCUUCUCCA   1008 Target Full Sequence	1.5	Zea mays NAC domain protein NAC5 (NAC40), mRNA	NA	coding protein	psRNATarget
XM_020538577.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:916   CACACGUGACCUGCUUCUCCA   936 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020538572.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||| targets:919   CACACGUGACCUGCUUCUCCA   939 Target Full Sequence	1.5	PREDICTED: Zea mays NAC domain-containing protein 92 (LOC103627335), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JX428530.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:692   CACACGUGACCUGCUUCUCCG   712 Target Full Sequence	2.5	Zea mays subsp. mays clone pUT3130 NAC32 NAC type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT063543.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:727   CACACGUGACCUGCUUCUCCG   747 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157307.2	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:727   CACACGUGACCUGCUUCUCCG   747 Target Full Sequence	2.5	Zea mays NAC domain protein NAC5 (LOC100284412), mRNA	NA	coding protein	psRNATarget
EU968233.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:782   CACACGUGACCUGCUUCUCCG   802 Target Full Sequence	2.5	Zea mays clone 317195 NAC domain protein NAC5 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547785.1	ncRNA:21   ACGUGCACGGGACGAAGAGGU   1   **||||||*|||||||||||= targets:828   CACACGUGACCUGCUUCUCCG   848 Target Full Sequence	2.5	PREDICTED: Zea mays NAC domain protein NAC5 (LOC100284412), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).