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BaseInfo

ncRNA ID	ath-miRf10307-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - AGAGAUACGACGGAGAUGGA - NA
Stem-loop(if miRNA)	A         CC         AUCACGCG  G    -  UU     ACUACGAGGUUCAUGAGUUUUCCUCCGUCUGGC GGA CCGUCUCCG  UCGUGUUUC        CC CCGU GA  CUUCG                                 U ||| |||||||||  |||||||||        || |||| ||  |||||                                 C CCU GGUAGAGGC  AGCAUAGAG        GG GGCA UU  CAAAG                                 G    A         --         -------A  G    G  --     GGCGGCACCGGAGAGGCAAUUUAGCCCCAACUA
Stem-loop sequence	GGAACCGUCUCCGCCUCGUGUUUCAUCACGCGCCGCCGUGAUUCUUCGACUACGAGGUUCAUGAGUUUUCCUCCGUCUGGCUCGAUCAACCCCGAUUUAACGGAGAGGCCACGGCGGGAAACUUGACGGGGGAGAGAUACGACGGAGAUGGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_123745.6	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:351   UCCAUCUCCGUCGUAUCUCU   370 Target Full Sequence	0.0	Arabidopsis thaliana Pseudouridine synthase/archaeosine transglycosylase-like family protein (APS4), mRNA	Pseudouridine synthase/archaeosine transglycosylase-like family protein(APS4)	coding protein	psRNATarget
AJ012586.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:122   UCCAUCUCCGUCGUAUCUCU   141 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for sulfate adenylyltransferase	NA	coding protein	psRNATarget
BX830619.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:149   UCCAUCUCCGUCGUAUCUCU   168 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB94ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AK226204.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:107   UCCAUCUCCGUCGUAUCUCU   126 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for ATP sulfurylase precursor, complete cds, clone: RAFL04-13-C05	NA	coding protein	psRNATarget
AY072193.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:106   UCCAUCUCCGUCGUAUCUCU   125 Target Full Sequence	0.0	Arabidopsis thaliana putative ATP sulfurylase precursor (At5g43780) mRNA, complete cds	NA	coding protein	psRNATarget
BX830658.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:92   UCCAUCUCCGUCGUAUCUCU   111 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS10ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY117323.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   |||||||||||||||||||| targets:94   UCCAUCUCCGUCGUAUCUCU   113 Target Full Sequence	0.0	Arabidopsis thaliana putative ATP sulfurylase precursor (At5g43780) mRNA, complete cds	NA	coding protein	psRNATarget
NM_114635.3	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   *||=*||||||||||||||| targets:263   ACCGGCUCCGUCGUAUCUCU   282 Target Full Sequence	2.0	Arabidopsis thaliana Plant invertase/pectin methylesterase inhibitor superfamily protein mRNA	Plant invertase/pectin methylesterase inhibitor superfamily protein(AT3G47670)	coding protein	psRNATarget
AY039603.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   *||=*||||||||||||||| targets:201   ACCGGCUCCGUCGUAUCUCU   220 Target Full Sequence	2.0	Arabidopsis thaliana AT3g47670/F1P2_220 mRNA, complete cds	NA	coding protein	psRNATarget
BX824407.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   *||=*||||||||||||||| targets:192   ACCGGCUCCGUCGUAUCUCU   211 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZH11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX826182.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   *||=*||||||||||||||| targets:193   ACCGGCUCCGUCGUAUCUCU   212 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL8ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX825638.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   *||=*||||||||||||||| targets:171   ACCGGCUCCGUCGUAUCUCU   190 Target Full Sequence	2.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZA08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT000499.1	ncRNA:20   AGGUAGAGGCAGCAUAGAGA   1   *||=*||||||||||||||| targets:124   ACCGGCUCCGUCGUAUCUCU   143 Target Full Sequence	2.0	Arabidopsis thaliana unknown protein (At3g47670/F1P2_220) mRNA, complete cds	NA	coding protein	psRNATarget