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BaseInfo

ncRNA ID	zma-miR167h-3p
Species	Zea mays
Class	miRNA
Genome position	chr6:93326220-93326362 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	19
Mature sequence(if miRNA)	19 - GAUCAUGUUGCAGCUUCAC - 37
Stem-loop(if miRNA)	ACU      -         GU         C            C  -CUC       GGCGGGCGUCUCGAGU    UUGCUG CUGUGAGAG  UGAAGCUGC AGCAUGAUCUGG UG    AGACGCC                G    |||||| |||||||||  ||||||||| |||||||||||| ||    |||||||                C    AACGAC GACGCUCUC  ACUUCGACG UUGUACUAGACC AC    GUUCGCA                U --A      C         UC         -            -  UUAG       GUGGCUGCUAGCUCGC
Stem-loop sequence	ACUUUGCUGCUGUGAGAGGUUGAAGCUGCCAGCAUGAUCUGGCUGCUCAGACGCCGGCGGGCGUCUCGAGUGCUCGCUCGAUCGUCGGUGACGCUUGGAUUCACCAGAUCAUGUUGCAGCUUCACUCUCUCGCAGCCAGCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403341.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1466 from Patent EP2074227	NA	coding protein	psRNATarget
JB163802.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1466 from Patent EP2559767	NA	coding protein	psRNATarget
HI403057.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1182 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235471.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1466 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235187.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1182 from Patent EP2985353	NA	coding protein	psRNATarget
JB163518.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1182 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235115.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1110 from Patent EP2985353	NA	coding protein	psRNATarget
JB163446.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1110 from Patent EP2559767	NA	coding protein	psRNATarget
HI402985.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   ||||||||||||||||||| targets:9   GUGAAGCUGCAACAUGAUC   27 Target Full Sequence	0.0	Sequence 1110 from Patent EP2074227	NA	coding protein	psRNATarget
EZ062927.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   |||||*||||||||||||= targets:2   GUGAAACUGCAACAUGAUU   20 Target Full Sequence	2.0	TSA: Zea mays contig64049, mRNA sequence	NA	coding protein	psRNATarget
NM_001165744.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   *||||||||||||||||*| targets:936   UUGAAGCUGCAACAUGAGC   954 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304302 (LOC100304302), mRNA	NA	coding protein	psRNATarget
BT060750.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   *||||||||||||||||*| targets:936   UUGAAGCUGCAACAUGAGC   954 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0043P16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541747.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   |*||||||||||||||||* targets:283   GAGAAGCUGCAACAUGAUA   301 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109941215 (LOC109941215), mRNA	NA	coding protein	psRNATarget
XM_020546476.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   |*||||||||||||||||* targets:67   GAGAAGCUGCAACAUGAUA   85 Target Full Sequence	2.0	PREDICTED: Zea mays hAT transposon superfamily protein (LOC103633377), mRNA	NA	coding protein	psRNATarget
XM_020545663.1	ncRNA:19   CACUUCGACGUUGUACUAG   1   |*||||||||||||||||* targets:392   GAGAAGCUGCAACAUGAUA   410 Target Full Sequence	2.0	PREDICTED: Zea mays hAT transposon superfamily protein (LOC103633038), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654725.2	ncRNA:19   CACUUCGACGUUGUACUAG   1   |*||||||||||||||||* targets:411   GAGAAGCUGCAACAUGAUA   429 Target Full Sequence	2.0	PREDICTED: Zea mays hAT transposon superfamily protein (LOC103633038), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660268.2	ncRNA:19   CACUUCGACGUUGUACUAG   1   |*||||||*|||||||||| targets:3354   GAGAAGCUCCAACAUGAUC   3372 Target Full Sequence	2.5	PREDICTED: Zea mays WW domain-containing protein (LOC100279861), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).