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BaseInfo

ncRNA ID zma-miR166a-3p
Species Zea mays
Class miRNA
Genome position chr6:84226489-84226701 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 5 - UCGGACCAGGCUUCAUUCCCC - 25
Stem-loop(if miRNA) -  A        UU      CU    GC GC      -  -    U   UU   UAGUCUCUCUUCUCUCC   C   UACUCUUCGCUUCCUACUCCUAUCUCGAUCCCUCUCU
 UG GGGGAAUG  GUCUGG  CGGG  C  CGCCGC CG CUCC UCC  CUC                 UAG AGC                                     U
 || ||||||||  ||||||  ||||  |  |||||| || |||| |||  |||                 ||| |||                                     C
 AC CCCCUUAC  CGGACC  GCUC  G  GUGGUG GC GAGG AGG  GAG                 AGA GCU                                     U
A  C        UU      AG    UA AU      A  A    C   -C   ---------------CC   -   AGGUUCUCUCCCCCCUUCUCCUUCUUCUUCUUCUUCU
Stem-loop sequence UGAGGGGAAUGUUGUCUGGCUCGGGGCCGCCGCCGCCGCUCCUUCCUUCUCUAGUCUCUCUUCUCUCCUAGCAGCUACUCUUCGCUUCCUACUCCUAUCUCGAUCCCUCUCUUCUUCUUCUUCUUCUUCUUCCUCUUCCCCCCUCUCUUGGAUCGAGACCGAGCGGACGGAGACGAGUGGUGUAGAUCUCGGACCAGGCUUCAUUCCCCCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI402941.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1066 from Patent EP2074227 NA coding protein psRNATarget
HI403240.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1365 from Patent EP2074227 NA coding protein psRNATarget
JB163701.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1365 from Patent EP2559767 NA coding protein psRNATarget
LQ235071.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1066 from Patent EP2985353 NA coding protein psRNATarget
LQ235370.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1365 from Patent EP2985353 NA coding protein psRNATarget
JB163402.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1066 from Patent EP2559767 NA coding protein psRNATarget
LQ235617.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1612 from Patent EP2985353 NA coding protein psRNATarget
HI403410.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1535 from Patent EP2074227 NA coding protein psRNATarget
HI403108.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1233 from Patent EP2074227 NA coding protein psRNATarget
HI403487.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1612 from Patent EP2074227 NA coding protein psRNATarget
HI408663.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 6788 from Patent EP2074227 NA coding protein psRNATarget
LQ235238.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1233 from Patent EP2985353 NA coding protein psRNATarget
LQ240793.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 6788 from Patent EP2985353 NA coding protein psRNATarget
JB163871.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1535 from Patent EP2559767 NA coding protein psRNATarget
JB163948.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1612 from Patent EP2559767 NA coding protein psRNATarget
LQ235540.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1535 from Patent EP2985353 NA coding protein psRNATarget
HI403183.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1308 from Patent EP2074227 NA coding protein psRNATarget
JB163569.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1233 from Patent EP2559767 NA coding protein psRNATarget
JB163644.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1308 from Patent EP2559767 NA coding protein psRNATarget
JB169124.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 6788 from Patent EP2559767 NA coding protein psRNATarget
LQ235313.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1308 from Patent EP2985353 NA coding protein psRNATarget
HI403135.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1260 from Patent EP2074227 NA coding protein psRNATarget
JB163596.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1260 from Patent EP2559767 NA coding protein psRNATarget
HI403443.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1568 from Patent EP2074227 NA coding protein psRNATarget
LQ235573.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1568 from Patent EP2985353 NA coding protein psRNATarget
JB163904.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1568 from Patent EP2559767 NA coding protein psRNATarget
LQ235265.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1260 from Patent EP2985353 NA coding protein psRNATarget
HI403437.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1562 from Patent EP2074227 NA coding protein psRNATarget
JB163898.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1562 from Patent EP2559767 NA coding protein psRNATarget
HI403131.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1256 from Patent EP2074227 NA coding protein psRNATarget
LQ235567.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1562 from Patent EP2985353 NA coding protein psRNATarget
JB163592.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1256 from Patent EP2559767 NA coding protein psRNATarget
LQ235261.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |||||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1256 from Patent EP2985353 NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |*|||||||=|||||||||||
targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887

1.5 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  *||||*|||||||||||||||
targets:1599   AGGGAUUGAAGCCUGGUCCGA   1619

1.0 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
BT056134.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  |*|||||||=|||||||||||
targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887

1.5 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
BT056134.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  *||||*|||||||||||||||
targets:1599   AGGGAUUGAAGCCUGGUCCGA   1619

1.0 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
KJ727606.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:572   CUGGGAUGAAGCCUGGUCCGG   592

2.0 Zea mays clone pUT5466 HB transcription factor (HB133) mRNA, partial cds NA coding protein psRNATarget
AY501430.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:635   CUGGGAUGAAGCCUGGUCCGG   655

2.0 Zea mays rolled leaf1 mRNA, complete cds NA coding protein psRNATarget
DQ286526.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:615   CUGGGAUGAAGCCUGGUCCGG   635

2.0 Zea mays rolled leaf 2 (rld2) mRNA, complete cds NA coding protein psRNATarget
NM_001112524.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:615   CUGGGAUGAAGCCUGGUCCGG   635

2.0 Zea mays rolled leaf 2 (rld2), mRNA NA coding protein psRNATarget
XM_008666322.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:755   CUGGGAUGAAGCCUGGUCCGG   775

2.0 PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666852.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:949   CUGGGAUGAAGCCUGGUCCGG   969

2.0 PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001309221.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1039   CUGGGAUGAAGCCUGGUCCGG   1059

2.0 Zea mays rolled leaf 1 (rld1), mRNA NA coding protein psRNATarget
BT066287.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1039   CUGGGAUGAAGCCUGGUCCGG   1059

2.0 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds NA coding protein psRNATarget
XM_008662182.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:934   CUGGGAUGAAGCCUGGUCCGG   954

2.0 PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001329573.1
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1153   CUGGGAUGAAGCCUGGUCCGG   1173

2.0 Zea mays uncharacterized LOC100192627 (LOC100192627), mRNA NA coding protein psRNATarget
XM_008657521.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1080   CCGGGAUGAAGCCUGGUCCGG   1100

2.0 PREDICTED: Zea mays homeobox-leucine zipper protein HOX29 (LOC103634943), mRNA NA coding protein psRNATarget
XM_008647829.2
ncRNA:21   CCCCUUACUUCGGACCAGGCU   1
  ||*|||*|||||||||||||*
targets:355   GGUGAAGGAAGCCUGGUCCGU   375

3.0 PREDICTED: Zea mays protein DETOXIFICATION 49 (LOC103627543), mRNA NA coding protein psRNATarget

Reference

1 PMID:14999285
"microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity";
Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
Nature. 428:84-88(2004).
2 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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