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BaseInfo

ncRNA ID zma-miR166a-5p
Species Zea mays
Class miRNA
Genome position chr6:84226489-84226701 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 188 - GGAAUGUUGUCUGGCUCGGGG - 208
Stem-loop(if miRNA) -  A        UU      CU    GC GC      -  -    U   UU   UAGUCUCUCUUCUCUCC   C   UACUCUUCGCUUCCUACUCCUAUCUCGAUCCCUCUCU
 UG GGGGAAUG  GUCUGG  CGGG  C  CGCCGC CG CUCC UCC  CUC                 UAG AGC                                     U
 || ||||||||  ||||||  ||||  |  |||||| || |||| |||  |||                 ||| |||                                     C
 AC CCCCUUAC  CGGACC  GCUC  G  GUGGUG GC GAGG AGG  GAG                 AGA GCU                                     U
A  C        UU      AG    UA AU      A  A    C   -C   ---------------CC   -   AGGUUCUCUCCCCCCUUCUCCUUCUUCUUCUUCUUCU
Stem-loop sequence UGAGGGGAAUGUUGUCUGGCUCGGGGCCGCCGCCGCCGCUCCUUCCUUCUCUAGUCUCUCUUCUCUCCUAGCAGCUACUCUUCGCUUCCUACUCCUAUCUCGAUCCCUCUCUUCUUCUUCUUCUUCUUCUUCCUCUUCCCCCCUCUCUUGGAUCGAGACCGAGCGGACGGAGACGAGUGGUGUAGAUCUCGGACCAGGCUUCAUUCCCCCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB169124.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 6788 from Patent EP2559767 NA coding protein psRNATarget
HI403410.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 1535 from Patent EP2074227 NA coding protein psRNATarget
HI408663.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 6788 from Patent EP2074227 NA coding protein psRNATarget
LQ235540.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 1535 from Patent EP2985353 NA coding protein psRNATarget
LQ240793.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 6788 from Patent EP2985353 NA coding protein psRNATarget
HI403108.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 1233 from Patent EP2074227 NA coding protein psRNATarget
LQ235238.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 1233 from Patent EP2985353 NA coding protein psRNATarget
JB163569.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 1233 from Patent EP2559767 NA coding protein psRNATarget
JB163871.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||||||||||||
targets:75   CCUCGAGCCAGACAACAUUCC   95

1.0 Sequence 1535 from Patent EP2559767 NA coding protein psRNATarget
HI403487.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=|||||||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

2.0 Sequence 1612 from Patent EP2074227 NA coding protein psRNATarget
HI403183.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=|||||||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

2.0 Sequence 1308 from Patent EP2074227 NA coding protein psRNATarget
LQ235617.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=|||||||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

2.0 Sequence 1612 from Patent EP2985353 NA coding protein psRNATarget
LQ235313.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=|||||||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

2.0 Sequence 1308 from Patent EP2985353 NA coding protein psRNATarget
JB163644.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=|||||||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

2.0 Sequence 1308 from Patent EP2559767 NA coding protein psRNATarget
JB163948.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=|||||||||||||||||=
targets:75   CCUCGAGCCAGACAACAUUCU   95

2.0 Sequence 1612 from Patent EP2559767 NA coding protein psRNATarget
BT056134.2
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||*|||||||||
targets:1959   CCUCGAGCCAGCCAACAUUCC   1979

2.5 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
BT056134.2
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  |*|||||||||||||||*|||
targets:1672   CACCGAGCCAGACAACAAUCC   1692

1.5 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||=||||||||*|||||||||
targets:1959   CCUCGAGCCAGCCAACAUUCC   1979

2.5 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  |*|||||||||||||||*|||
targets:1672   CACCGAGCCAGACAACAAUCC   1692

1.5 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
HI403443.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||==||*||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

3.0 Sequence 1568 from Patent EP2074227 NA coding protein psRNATarget
LQ235265.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||==||*||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

3.0 Sequence 1260 from Patent EP2985353 NA coding protein psRNATarget
JB163904.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||==||*||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

3.0 Sequence 1568 from Patent EP2559767 NA coding protein psRNATarget
JB163596.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||==||*||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

3.0 Sequence 1260 from Patent EP2559767 NA coding protein psRNATarget
HI403135.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||==||*||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

3.0 Sequence 1260 from Patent EP2074227 NA coding protein psRNATarget
LQ235573.1
ncRNA:21   GGGGCUCGGUCUGUUGUAAGG   1
  ||==||*||||||||||||||
targets:104   CCUUGAACCAGACAACAUUCC   124

3.0 Sequence 1568 from Patent EP2985353 NA coding protein psRNATarget

Reference

1 PMID:14999285
"microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity";
Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC;
Nature. 428:84-88(2004).
2 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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