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BaseInfo

ncRNA ID	zma-miR172b-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:215851121-215851246 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	104 - CAGCACCAUCAAGAUUCACA - 123
Stem-loop(if miRNA)	C           A    GUCCAACUCAUG       C          CUU  AUG     U GUGCAGCA CAUCAAGAUUC CAUC            CAUCAUG AUAUAUGCAU   CA   AUGCG G |||||||| ||||||||||| ||||            ||||||| ||||||||||   ||   ||||| C UACGUCGU GUAGUUCUAAG GUAG            GUAGUAU UAUAUAUGUG   GU   UACGC C         A           A    -----------A       A          --U  --G     U
Stem-loop sequence	GUGCAGCACCAUCAAGAUUCACAUCGUCCAACUCAUGCAUCAUGCAUAUAUGCAUCUUCAAUGAUGCGUGCCUCGCAUGUGUGUGUAUAUAUAUAUGAUGAGAUGAGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163841.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:68   UGAGAAUCUUGAUGAUGCUG   87 Target Full Sequence	2.5	Sequence 1505 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235510.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:68   UGAGAAUCUUGAUGAUGCUG   87 Target Full Sequence	2.5	Sequence 1505 from Patent EP2985353	NA	coding protein	psRNATarget
HI403080.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:68   UGAGAAUCUUGAUGAUGCUG   87 Target Full Sequence	2.5	Sequence 1205 from Patent EP2074227	NA	coding protein	psRNATarget
JB163541.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:68   UGAGAAUCUUGAUGAUGCUG   87 Target Full Sequence	2.5	Sequence 1205 from Patent EP2559767	NA	coding protein	psRNATarget
HI403380.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:68   UGAGAAUCUUGAUGAUGCUG   87 Target Full Sequence	2.5	Sequence 1505 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235210.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:68   UGAGAAUCUUGAUGAUGCUG   87 Target Full Sequence	2.5	Sequence 1205 from Patent EP2985353	NA	coding protein	psRNATarget
JB163858.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:114   UGAGAAUCUUGAUGAUGCUG   133 Target Full Sequence	2.5	Sequence 1522 from Patent EP2559767	NA	coding protein	psRNATarget
JB163557.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:114   UGAGAAUCUUGAUGAUGCUG   133 Target Full Sequence	2.5	Sequence 1221 from Patent EP2559767	NA	coding protein	psRNATarget
HI403397.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:114   UGAGAAUCUUGAUGAUGCUG   133 Target Full Sequence	2.5	Sequence 1522 from Patent EP2074227	NA	coding protein	psRNATarget
HI403096.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:114   UGAGAAUCUUGAUGAUGCUG   133 Target Full Sequence	2.5	Sequence 1221 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235226.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:114   UGAGAAUCUUGAUGAUGCUG   133 Target Full Sequence	2.5	Sequence 1221 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235527.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:114   UGAGAAUCUUGAUGAUGCUG   133 Target Full Sequence	2.5	Sequence 1522 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241077.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:116   UGAGAAUCUUGAUGAUGCUG   135 Target Full Sequence	2.5	Sequence 7072 from Patent EP2985353	NA	coding protein	psRNATarget
JB169408.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:116   UGAGAAUCUUGAUGAUGCUG   135 Target Full Sequence	2.5	Sequence 7072 from Patent EP2559767	NA	coding protein	psRNATarget
HI408947.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:116   UGAGAAUCUUGAUGAUGCUG   135 Target Full Sequence	2.5	Sequence 7072 from Patent EP2074227	NA	coding protein	psRNATarget
EU945504.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   ||*|||||||||||*||||| targets:1107   UGAGAAUCUUGAUGAUGCUG   1126 Target Full Sequence	2.5	Zea mays clone 275445 mRNA sequence	NA	coding protein	psRNATarget
BT037499.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   *|*|||||||||||||||*| targets:318   AGAGAAUCUUGAUGGUGCAG   337 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174M09 mRNA, complete cds	NA	coding protein	psRNATarget
BT062141.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   *|*|||||||||||||||*| targets:2107   AGAGAAUCUUGAUGGUGCAG   2126 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218O11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001309907.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   *|*|||||||||||||||*| targets:2157   AGAGAAUCUUGAUGGUGCAG   2176 Target Full Sequence	2.5	Zea mays uncharacterized LOC100216876 (gpm353), mRNA	NA	coding protein	psRNATarget
EU975755.1	ncRNA:20   ACACUUAGAACUACCACGAC   1   *|*|||||||||||||||*| targets:2153   AGAGAAUCUUGAUGGUGCAG   2172 Target Full Sequence	2.5	Zea mays clone 499577 mRNA sequence	NA	coding protein	psRNATarget
XM_008681523.2	ncRNA:20   ACACUUAGAACUACCACGAC   1   *|*|||||||||||||||*| targets:2186   AGAGAAUCUUGAUGGUGCAG   2205 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100216876 (gpm353), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681522.2	ncRNA:20   ACACUUAGAACUACCACGAC   1   *|*|||||||||||||||*| targets:2232   AGAGAAUCUUGAUGGUGCAG   2251 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100216876 (gpm353), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).