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BaseInfo

ncRNA ID zma-miR396g-3p
Species Zea mays
Class miRNA
Genome position chr5:214350891-214351004 [+]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 93 - GUUCAAGAAAGCUGUGGAAGA - 113
Stem-loop(if miRNA) --UUC          A         CC  U   U   U    UCAAUUGAAACUCGAU
     CCACAGCUUU UUGAACUGC  UC UGC UGC UGGA                C
     |||||||||| |||||||||  || ||| ||| ||||
     GGUGUCGAAA AACUUGACG  AG ACG ACG UCGU                A
UAGAA          G         -U  U   U   -    CCGACACGACACCUGG
Stem-loop sequence UUCCCACAGCUUUAUUGAACUGCCCUCUUGCUUGCUUGGAUCAAUUGAAACUCGAUCAGGUCCACAGCACAGCCUGCUGCAUGCAUGAUGCAGUUCAAGAAAGCUGUGGAAGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166373.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:11   UCUUCCACAGCUUUCUUGAAC   31

0.0 Sequence 4037 from Patent EP2559767 NA coding protein psRNATarget
HI405912.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:11   UCUUCCACAGCUUUCUUGAAC   31

0.0 Sequence 4037 from Patent EP2074227 NA coding protein psRNATarget
LQ238042.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:11   UCUUCCACAGCUUUCUUGAAC   31

0.0 Sequence 4037 from Patent EP2985353 NA coding protein psRNATarget
HI405909.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:11   UCUUCCACAGCUUUCUUGAAC   31

0.0 Sequence 4034 from Patent EP2074227 NA coding protein psRNATarget
JB166370.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:11   UCUUCCACAGCUUUCUUGAAC   31

0.0 Sequence 4034 from Patent EP2559767 NA coding protein psRNATarget
LQ238039.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:11   UCUUCCACAGCUUUCUUGAAC   31

0.0 Sequence 4034 from Patent EP2985353 NA coding protein psRNATarget
EU941272.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |||||||||||||||||||||
targets:190   UCUUCCACAGCUUUCUUGAAC   210

0.0 Zea mays clone 1438995 mRNA sequence NA coding protein psRNATarget
EU975595.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  |=||||||||-|||||||||||
targets:295   UUUUCCACAGGCUUUCUUGAAC   316

3.0 Zea mays clone 493488 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI408653.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 6778 from Patent EP2074227 NA coding protein psRNATarget
JB169114.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 6778 from Patent EP2559767 NA coding protein psRNATarget
LQ240783.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 6778 from Patent EP2985353 NA coding protein psRNATarget
LQ235245.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 1240 from Patent EP2985353 NA coding protein psRNATarget
HI403115.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 1240 from Patent EP2074227 NA coding protein psRNATarget
JB163576.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 1240 from Patent EP2559767 NA coding protein psRNATarget
LQ235545.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 1540 from Patent EP2985353 NA coding protein psRNATarget
HI403415.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 1540 from Patent EP2074227 NA coding protein psRNATarget
JB163876.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:8   CUUUCCACAGGCUUUCUUGAAC   29

3.0 Sequence 1540 from Patent EP2559767 NA coding protein psRNATarget
EU950590.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:123   CUUUCCACAGGCUUUCUUGAAC   144

3.0 Zea mays clone 501145 mRNA sequence NA coding protein psRNATarget
NM_001148113.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:111   CUUUCCACAGGCUUUCUUGAAC   132

3.0 Zea mays uncharacterized LOC100273701 (LOC100273701), mRNA NA coding protein psRNATarget
BT041660.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:111   CUUUCCACAGGCUUUCUUGAAC   132

3.0 Zea mays full-length cDNA clone ZM_BFb0026O01 mRNA, complete cds NA coding protein psRNATarget
XM_008663410.2
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:1155   CUUUCCACAGGCUUUCUUGAAC   1176

3.0 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008663408.2
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:1156   CUUUCCACAGGCUUUCUUGAAC   1177

3.0 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008663409.2
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:1156   CUUUCCACAGGCUUUCUUGAAC   1177

3.0 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020544948.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:1153   CUUUCCACAGGCUUUCUUGAAC   1174

3.0 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020544947.1
ncRNA:21   AGAAGGUGUC-GAAAGAACUUG   1
  *=||||||||-|||||||||||
targets:1150   CUUUCCACAGGCUUUCUUGAAC   1171

3.0 PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA NA coding protein psRNATarget
BT061355.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  ||||||*|||*||||||||||
targets:2292   UCUUCCUCAGAUUUCUUGAAC   2312

2.5 Zea mays full-length cDNA clone ZM_BFb0138I04 mRNA, complete cds NA coding protein psRNATarget
LQ238043.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:11   UUUCCCACAGCUUUAUUGAAC   31

2.5 Sequence 4038 from Patent EP2985353 NA coding protein psRNATarget
HI405913.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:11   UUUCCCACAGCUUUAUUGAAC   31

2.5 Sequence 4038 from Patent EP2074227 NA coding protein psRNATarget
JB166374.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:11   UUUCCCACAGCUUUAUUGAAC   31

2.5 Sequence 4038 from Patent EP2559767 NA coding protein psRNATarget
JB163908.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:9   UUUCCCACAGCUUUAUUGAAC   29

2.5 Sequence 1572 from Patent EP2559767 NA coding protein psRNATarget
JB163598.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:9   UUUCCCACAGCUUUAUUGAAC   29

2.5 Sequence 1262 from Patent EP2559767 NA coding protein psRNATarget
HI403447.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:9   UUUCCCACAGCUUUAUUGAAC   29

2.5 Sequence 1572 from Patent EP2074227 NA coding protein psRNATarget
HI403137.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:9   UUUCCCACAGCUUUAUUGAAC   29

2.5 Sequence 1262 from Patent EP2074227 NA coding protein psRNATarget
LQ235267.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:9   UUUCCCACAGCUUUAUUGAAC   29

2.5 Sequence 1262 from Patent EP2985353 NA coding protein psRNATarget
LQ235577.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  |=|*||||||||||*||||||
targets:9   UUUCCCACAGCUUUAUUGAAC   29

2.5 Sequence 1572 from Patent EP2985353 NA coding protein psRNATarget
EZ079193.1
ncRNA:21   AGAAGGUGUCGAAAGAACUUG   1
  *|||*||||||||*|||||||
targets:70   CCUUGCACAGCUUGCUUGAAC   90

2.5 TSA: Zea mays contig14832, mRNA sequence NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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