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BaseInfo

ncRNA ID	zma-miR396g-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:214350891-214351004 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UCCCACAGCUUUAUUGAACUG - 22
Stem-loop(if miRNA)	--UUC          A         CC  U   U   U    UCAAUUGAAACUCGAU      CCACAGCUUU UUGAACUGC  UC UGC UGC UGGA                C      |||||||||| |||||||||  || ||| ||| ||||      GGUGUCGAAA AACUUGACG  AG ACG ACG UCGU                A UAGAA          G         -U  U   U   -    CCGACACGACACCUGG
Stem-loop sequence	UUCCCACAGCUUUAUUGAACUGCCCUCUUGCUUGCUUGGAUCAAUUGAAACUCGAUCAGGUCCACAGCACAGCCUGCUGCAUGCAUGAUGCAGUUCAAGAAAGCUGUGGAAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238042.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:92   CAGUUCAAUAAAGCUGUGGGA   112 Target Full Sequence	0.0	Sequence 4037 from Patent EP2985353	NA	coding protein	psRNATarget
JB166373.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:92   CAGUUCAAUAAAGCUGUGGGA   112 Target Full Sequence	0.0	Sequence 4037 from Patent EP2559767	NA	coding protein	psRNATarget
HI405912.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:92   CAGUUCAAUAAAGCUGUGGGA   112 Target Full Sequence	0.0	Sequence 4037 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238039.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:102   CAGUUCAAUAAAGCUGUGGGA   122 Target Full Sequence	0.0	Sequence 4034 from Patent EP2985353	NA	coding protein	psRNATarget
HI405909.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:102   CAGUUCAAUAAAGCUGUGGGA   122 Target Full Sequence	0.0	Sequence 4034 from Patent EP2074227	NA	coding protein	psRNATarget
JB166370.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:102   CAGUUCAAUAAAGCUGUGGGA   122 Target Full Sequence	0.0	Sequence 4034 from Patent EP2559767	NA	coding protein	psRNATarget
EU941272.1	ncRNA:21   GUCAAGUUAUUUCGACACCCU   1   ||||||||||||||||||||| targets:269   CAGUUCAAUAAAGCUGUGGGA   289 Target Full Sequence	0.0	Zea mays clone 1438995 mRNA sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).