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BaseInfo

ncRNA ID	zma-miR396f-3p
Species	Zea mays
Class	miRNA
Genome position	chr5:214340396-214340512 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	96 - GGUCAAGAAAGCUGUGGGAAG - 116
Stem-loop(if miRNA)	--                  A    U     -----------------U   UCUCUCUUGGAACGG   UUUCCACAGCUUUCUUGA CUUC UCUUC                  UCU               C   |||||||||||||||||| |||| |||||                  |||   AAGGGUGUCGAAAGAACU GAAG AGAAG                  CUG               A AG                  G    C     CCUCUACUCUCUCUCUCU   UCUAAGCUUCUUUCG
Stem-loop sequence	UUUCCACAGCUUUCUUGAACUUCUUCUUCUUCUUCUCUCUUGGAACGGCAGCUUUCUUCGAAUCUGUCUCUCUCUCUCUCAUCUCCGAAGACGAAGGUCAAGAAAGCUGUGGGAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403394.1	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ||||||||||||||||||||| targets:13   CUUCCCACAGCUUUCUUGACC   33 Target Full Sequence	0.0	Sequence 1519 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235524.1	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ||||||||||||||||||||| targets:13   CUUCCCACAGCUUUCUUGACC   33 Target Full Sequence	0.0	Sequence 1519 from Patent EP2985353	NA	coding protein	psRNATarget
JB163855.1	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ||||||||||||||||||||| targets:13   CUUCCCACAGCUUUCUUGACC   33 Target Full Sequence	0.0	Sequence 1519 from Patent EP2559767	NA	coding protein	psRNATarget
JB163787.1	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ||||||||=|||||||||||| targets:13   CUUCCCACGGCUUUCUUGACC   33 Target Full Sequence	1.5	Sequence 1451 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235456.1	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ||||||||=|||||||||||| targets:13   CUUCCCACGGCUUUCUUGACC   33 Target Full Sequence	1.5	Sequence 1451 from Patent EP2985353	NA	coding protein	psRNATarget
HI403326.1	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ||||||||=|||||||||||| targets:13   CUUCCCACGGCUUUCUUGACC   33 Target Full Sequence	1.5	Sequence 1451 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008646683.2	ncRNA:21   GAAGGGUGUCGAAAGAACUGG   1   ***||=||||||||||||||= targets:268   GCACCUACAGCUUUCUUGACU   288 Target Full Sequence	3.0	PREDICTED: Zea mays lysine-specific demethylase JMJ706 (LOC103626296), transcript variant X9, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).