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BaseInfo

ncRNA ID zma-miR166m-3p
Species Zea mays
Class miRNA
Genome position chr5:210632469-210632624 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 20 - UCGGACCAGGCUUCAUUCCUC - 40
Stem-loop(if miRNA) UCCUUGGUCU    --------              UU G    CU   G  A  -  ---C    U   U  CA  C    C     UC
          GGGG        GUUUGUGGGGAAUG  G CUGG  CGA GC UC CG    GUCC GGC CG  GU GCAG GCAGA  G
          ||||        ||||||||||||||  | ||||  ||| || || ||    |||| ||| ||  || |||| |||||
          CCCC        CAAACGCUCCUUAC  C GACC  GCU CG AG GC    CAGG CCG GC  CA CGUC CGUUU  U
---------A    UACGUGGC              UU G    AG   G  G  A  UAGA    -   -  --  U    -     UG
Stem-loop sequence UCCUUGGUCUGGGGGUUUGUGGGGAAUGUUGGCUGGCUCGAGGCAUCCGCGUCCUGGCUCGCAGUCGCAGCGCAGAUCGUGUUUUGCCUGCUACCGGCCGGACAGAUCGAGAGGCGUCGGACCAGGCUUCAUUCCUCGCAAACCGGUGCAUCCCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163402.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1066 from Patent EP2559767 NA coding protein psRNATarget
JB163701.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1365 from Patent EP2559767 NA coding protein psRNATarget
HI402941.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1066 from Patent EP2074227 NA coding protein psRNATarget
HI403240.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1365 from Patent EP2074227 NA coding protein psRNATarget
LQ235370.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1365 from Patent EP2985353 NA coding protein psRNATarget
LQ235071.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1066 from Patent EP2985353 NA coding protein psRNATarget
JB163948.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1612 from Patent EP2559767 NA coding protein psRNATarget
HI408663.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 6788 from Patent EP2074227 NA coding protein psRNATarget
HI403487.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1612 from Patent EP2074227 NA coding protein psRNATarget
JB163644.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1308 from Patent EP2559767 NA coding protein psRNATarget
LQ235313.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1308 from Patent EP2985353 NA coding protein psRNATarget
JB163569.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1233 from Patent EP2559767 NA coding protein psRNATarget
LQ240793.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 6788 from Patent EP2985353 NA coding protein psRNATarget
JB169124.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 6788 from Patent EP2559767 NA coding protein psRNATarget
JB163871.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1535 from Patent EP2559767 NA coding protein psRNATarget
HI403410.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1535 from Patent EP2074227 NA coding protein psRNATarget
LQ235238.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1233 from Patent EP2985353 NA coding protein psRNATarget
LQ235540.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1535 from Patent EP2985353 NA coding protein psRNATarget
HI403108.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1233 from Patent EP2074227 NA coding protein psRNATarget
HI403183.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1308 from Patent EP2074227 NA coding protein psRNATarget
LQ235617.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1612 from Patent EP2985353 NA coding protein psRNATarget
LQ235573.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1568 from Patent EP2985353 NA coding protein psRNATarget
HI403443.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1568 from Patent EP2074227 NA coding protein psRNATarget
LQ235265.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1260 from Patent EP2985353 NA coding protein psRNATarget
HI403135.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1260 from Patent EP2074227 NA coding protein psRNATarget
JB163596.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1260 from Patent EP2559767 NA coding protein psRNATarget
JB163904.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1568 from Patent EP2559767 NA coding protein psRNATarget
JB163592.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1256 from Patent EP2559767 NA coding protein psRNATarget
LQ235261.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1256 from Patent EP2985353 NA coding protein psRNATarget
LQ235567.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1562 from Patent EP2985353 NA coding protein psRNATarget
HI403437.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1562 from Patent EP2074227 NA coding protein psRNATarget
HI403131.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1256 from Patent EP2074227 NA coding protein psRNATarget
JB163898.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=|||||||||||||||||||
targets:11   GGGGAAUGAAGCCUGGUCCGA   31

0.0 Sequence 1562 from Patent EP2559767 NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |||||||||=|||||||||||
targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887

1.5 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
NM_001153310.1
ncRNA:21   CUCCUUA-CUUCGGACCAGGCU   1
  *|||=||-||||||||||||||
targets:1598   AAGGGAUUGAAGCCUGGUCCGA   1619

3.0 Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA NA coding protein psRNATarget
BT056134.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |||||||||=|||||||||||
targets:1867   GAGGAAUGAGGCCUGGUCCGA   1887

1.5 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
BT056134.2
ncRNA:21   CUCCUUA-CUUCGGACCAGGCU   1
  *|||=||-||||||||||||||
targets:1598   AAGGGAUUGAAGCCUGGUCCGA   1619

3.0 Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds NA coding protein psRNATarget
BT085130.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:794   UUGGGAUGAAGCCUGGUCCGG   814

2.0 Zea mays full-length cDNA clone ZM_BFb0298G05 mRNA, complete cds NA coding protein psRNATarget
KJ727606.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:572   CUGGGAUGAAGCCUGGUCCGG   592

2.0 Zea mays clone pUT5466 HB transcription factor (HB133) mRNA, partial cds NA coding protein psRNATarget
HQ858784.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:584   UUGGGAUGAAGCCUGGUCCGG   604

2.0 Zea mays clone UT1770 HB homeobox transcription factor mRNA, partial cds NA coding protein psRNATarget
AY501430.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:635   CUGGGAUGAAGCCUGGUCCGG   655

2.0 Zea mays rolled leaf1 mRNA, complete cds NA coding protein psRNATarget
NM_001112524.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:615   CUGGGAUGAAGCCUGGUCCGG   635

2.0 Zea mays rolled leaf 2 (rld2), mRNA NA coding protein psRNATarget
DQ286526.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:615   CUGGGAUGAAGCCUGGUCCGG   635

2.0 Zea mays rolled leaf 2 (rld2) mRNA, complete cds NA coding protein psRNATarget
BT067483.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:662   UUGGGAUGAAGCCUGGUCCGG   682

2.0 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds NA coding protein psRNATarget
EU975909.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:668   UUGGGAUGAAGCCUGGUCCGG   688

2.0 Zea mays clone 505073 mRNA sequence NA coding protein psRNATarget
NM_001152743.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:726   UUGGGAUGAAGCCUGGUCCGG   746

2.0 Zea mays putative homeobox/lipid-binding domain family protein (LOC100279785), mRNA NA coding protein psRNATarget
BT054873.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:726   UUGGGAUGAAGCCUGGUCCGG   746

2.0 Zea mays full-length cDNA clone ZM_BFc0170L18 mRNA, complete cds NA coding protein psRNATarget
XM_020550129.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:722   UUGGGAUGAAGCCUGGUCCGG   742

2.0 PREDICTED: Zea mays putative homeobox/lipid-binding domain family protein (LOC100279785), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666322.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:755   CUGGGAUGAAGCCUGGUCCGG   775

2.0 PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001148922.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:813   UUGGGAUGAAGCCUGGUCCGG   833

2.0 Zea mays Homeobox-leucine zipper protein ATHB-14 (TIDP3177), mRNA NA coding protein psRNATarget
XM_008666852.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:949   CUGGGAUGAAGCCUGGUCCGG   969

2.0 PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020553176.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:984   UUGGGAUGAAGCCUGGUCCGG   1004

2.0 PREDICTED: Zea mays uncharacterized LOC100274025 (IDP322), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001309221.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1039   CUGGGAUGAAGCCUGGUCCGG   1059

2.0 Zea mays rolled leaf 1 (rld1), mRNA NA coding protein psRNATarget
BT066287.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1039   CUGGGAUGAAGCCUGGUCCGG   1059

2.0 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds NA coding protein psRNATarget
XM_008662182.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:934   CUGGGAUGAAGCCUGGUCCGG   954

2.0 PREDICTED: Zea mays rolled leaf 2 (rld2), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553214.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1061   UUGGGAUGAAGCCUGGUCCGG   1081

2.0 PREDICTED: Zea mays Homeobox-leucine zipper protein ATHB-14 (gpm56a), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001329573.1
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1153   CUGGGAUGAAGCCUGGUCCGG   1173

2.0 Zea mays uncharacterized LOC100192627 (LOC100192627), mRNA NA coding protein psRNATarget
XM_008657521.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  **||=|||||||||||||||=
targets:1080   CCGGGAUGAAGCCUGGUCCGG   1100

2.0 PREDICTED: Zea mays homeobox-leucine zipper protein HOX29 (LOC103634943), mRNA NA coding protein psRNATarget
XM_008647829.2
ncRNA:21   CUCCUUACUUCGGACCAGGCU   1
  |=*|||*|||||||||||||*
targets:355   GGUGAAGGAAGCCUGGUCCGU   375

3.0 PREDICTED: Zea mays protein DETOXIFICATION 49 (LOC103627543), mRNA NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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