Search result

BaseInfo

ncRNA ID	zma-miR166m-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:210632469-210632624 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	114 - GGAAUGUUGGCUGGCUCGAGG - 134
Stem-loop(if miRNA)	UCCUUGGUCU    --------              UU G    CU   G  A  -  ---C    U   U  CA  C    C     UC           GGGG        GUUUGUGGGGAAUG  G CUGG  CGA GC UC CG    GUCC GGC CG  GU GCAG GCAGA  G           ||||        ||||||||||||||  | ||||  ||| || || ||    |||| ||| ||  || |||| |||||           CCCC        CAAACGCUCCUUAC  C GACC  GCU CG AG GC    CAGG CCG GC  CA CGUC CGUUU  U ---------A    UACGUGGC              UU G    AG   G  G  A  UAGA    -   -  --  U    -     UG
Stem-loop sequence	UCCUUGGUCUGGGGGUUUGUGGGGAAUGUUGGCUGGCUCGAGGCAUCCGCGUCCUGGCUCGCAGUCGCAGCGCAGAUCGUGUUUUGCCUGCUACCGGCCGGACAGAUCGAGAGGCGUCGGACCAGGCUUCAUUCCUCGCAAACCGGUGCAUCCCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT056134.2	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   ||||||||||||||||||||| targets:1959   CCUCGAGCCAGCCAACAUUCC   1979 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153310.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   ||||||||||||||||||||| targets:1959   CCUCGAGCCAGCCAACAUUCC   1979 Target Full Sequence	0.0	Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA	NA	coding protein	psRNATarget
HI403108.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 1233 from Patent EP2074227	NA	coding protein	psRNATarget
HI403410.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 1535 from Patent EP2074227	NA	coding protein	psRNATarget
JB163871.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 1535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169124.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 6788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240793.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 6788 from Patent EP2985353	NA	coding protein	psRNATarget
JB163569.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 1233 from Patent EP2559767	NA	coding protein	psRNATarget
HI408663.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 6788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235238.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 1233 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235540.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	1.5	Sequence 1535 from Patent EP2985353	NA	coding protein	psRNATarget
JB163644.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	2.5	Sequence 1308 from Patent EP2559767	NA	coding protein	psRNATarget
HI403183.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	2.5	Sequence 1308 from Patent EP2074227	NA	coding protein	psRNATarget
JB163948.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	2.5	Sequence 1612 from Patent EP2559767	NA	coding protein	psRNATarget
HI403487.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	2.5	Sequence 1612 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235313.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	2.5	Sequence 1308 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235617.1	ncRNA:21   GGAGCUCGGUCGGUUGUAAGG   1   |||||||||||*||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	2.5	Sequence 1612 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).