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BaseInfo

ncRNA ID	zma-miR166k-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:210632198-210632365 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	126 - GGAUUGUUGUCUGGCUCGGGG - 146
Stem-loop(if miRNA)	--GC    U  G  UA              UU      CU  GG            GAU    UCAUAACAUAU   U  GU     UA   U     AUGC CG GU  GGUCAGGGGGAUUG  GUCUGG  CG  GUCUCCGGUCGA   CGAU           ACG AC  GCUUC  GCC U     |||| || ||  ||||||||||||||  ||||||  ||  ||||||||||||   ||||           ||| ||  |||||  ||| G     UACG GC UA  CCAGUUUCCCUAAC  CGGACC  GC  UAGAGGCCAGCU   GCUG           UGC UG  CGAGG  CGG C GGAU    -  G  --              UU      AG  UU            ---    ----------U   -  AU     --   C
Stem-loop sequence	GCAUGCUCGGGUUAGGUCAGGGGGAUUGUUGUCUGGCUCGGGGUCUCCGGUCGAGAUCGAUUCAUAACAUAUACGUACGUGCUUCUAGCCUUGCCGGCGGAGCUAGUCGUUGUCGUCGACCGGAGAUUUCGGACCAGGCUUCAAUCCCUUUGACCAUGCGGCAUUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT056134.2	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   |*||||||||||||||||||| targets:1672   CACCGAGCCAGACAACAAUCC   1692 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0035E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153310.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   |*||||||||||||||||||| targets:1672   CACCGAGCCAGACAACAAUCC   1692 Target Full Sequence	0.0	Zea mays uncharacterized LOC100280385 (LOC100280385), mRNA	NA	coding protein	psRNATarget
HI403410.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 1535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235540.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 1535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169124.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 6788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240793.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 6788 from Patent EP2985353	NA	coding protein	psRNATarget
HI408663.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 6788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235238.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 1233 from Patent EP2985353	NA	coding protein	psRNATarget
HI403108.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 1233 from Patent EP2074227	NA	coding protein	psRNATarget
JB163871.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 1535 from Patent EP2559767	NA	coding protein	psRNATarget
JB163569.1	ncRNA:21   GGGGCUCGGUCUGUUGUUAGG   1   ||=||||||||||||||*||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.5	Sequence 1233 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).