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BaseInfo

ncRNA ID	zma-miR394a-3p
Species	Zea mays
Class	miRNA
Genome position	chr5:193819088-193819213 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	90 - AGGUGGGCAUACUGCCAAUG - 109
Stem-loop(if miRNA)	--  C      UGA G      -      U C           UCUCGCCGAUCUU      --A U   GG GCUUAC   A AGUUCC UUGGCA U UGUCCACCUCC             GCAGAA   G U   || ||||||   | |||||| |||||| | |||||||||||             ||||||   |   UC CGGAUG   U UCGAGG AACCGU A ACGGGUGGAGG             UGUCUU   C U CC  -      --- G      U      C U           -UUUUUUUUACGU      GAC A
Stem-loop sequence	GGCGCUUACUGAAGAGUUCCUUGGCAUUCUGUCCACCUCCUCUCGCCGAUCUUGCAGAAAGUUUACCAGUUCUGUUGCAUUUUUUUUGGAGGUGGGCAUACUGCCAAUGGAGCUGUGUAGGCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001175876.1	ncRNA:20   GUAACCGUCAUACGGGUGGA   1   |||||||||||||||||||| targets:792   CAUUGGCAGUAUGCCCACCU   811 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383214 (LOC100383214), mRNA	NA	coding protein	psRNATarget
BT066604.2	ncRNA:20   GUAACCGUCAUACGGGUGGA   1   |||||||||||||||||||| targets:792   CAUUGGCAGUAUGCCCACCU   811 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0040F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT087456.1	ncRNA:20   GUAACCGUCAUACGGGUGGA   1   *|*||||||*|||||||||| targets:170   GAGUGGCAGGAUGCCCACCU   189 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0083F08 mRNA, complete cds	NA	coding protein	psRNATarget
EU960454.1	ncRNA:20   GUAACCGUCAUACGGGUGGA   1   *|*||||||*|||||||||| targets:182   GAGUGGCAGGAUGCCCACCU   201 Target Full Sequence	2.5	Zea mays clone 225012 PNT1 mRNA, complete cds	NA	coding protein	psRNATarget
BT036234.1	ncRNA:20   GUAACCGUCAUACGGGUGGA   1   *|*||||||*|||||||||| targets:156   GAGUGGCAGGAUGCCCACCU   175 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0101P15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138939.1	ncRNA:20   GUAACCGUCAUACGGGUGGA   1   *|*||||||*|||||||||| targets:156   GAGUGGCAGGAUGCCCACCU   175 Target Full Sequence	2.5	Zea mays PNT1 (LOC100193858), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).