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BaseInfo

ncRNA ID	ath-miR856
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:11957460-11957730 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	28 - UAAUCCUACCAAUAACUUCAGC - 49
Stem-loop(if miRNA)	AAGA           U  C    AUC    C          G    AUCA       --     A  -    C        GA          GUA  G     U    U   -A        U  AUUUUA    C AUGUAU    GGUGAGACUGU GG UUUA   CUAC AAUAACUUCA CUGC    UGAAGAG  UAGAC GA GAUU UGGCGGUU  GGGUUUCUUC   GA GUUGA CGAU CUU  AUGUCCUG GG      AGUU C ||||||    ||||||||||| || ||||   |||| |||||||||| ||||    |||||||  ||||| || |||| ||||||||  ||||||||||   || ||||| |||| |||  |||||||| ||      |||| C UACGUA    CUAUUUUGACA CC AAAU   GGUG UUAUUGAAGU GACG    AUUUCUC  AUCUG CU CUAA AUCGCCGA  UCCAAAGAAG   CU UAACU GCUA GAA  UACAGGAU UC      UCAA A       ----           C  A    -AU    U          A    ----       UA     G  A    C        -G          AAC  G     U    -   CA        -  --GUUG    A
Stem-loop sequence	AUGUAUAAGAGGUGAGACUGUUGGCUUUAAUCCUACCAAUAACUUCAGCUGCAUCAUGAAGAGUAGACAGAGAUUCUGGCGGUUGAGGGUUUCUUCGUAGAGGUUGAUCGAUUCUUAAUGUCCUGUGGAUUUUAAGUUCCCAAAACUGUUGCUUAGGACAUACAAGAUCGUUCAAUGUCCAAGAAGAAACCUGAGCCGCUACAAUCAUCGGUCUAAUCUCUUUAGCAGAUGAAGUUAUUUGUGGUAUAAAACCCACAGUUUUAUCAUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY926474.1	ncRNA:22   CGACUUCAAUAACCAUCCUAAU   1   |||||||||||||||=|||||| targets:184   GCUGAAGUUAUUGGUGGGAUUA   205 Target Full Sequence	1.5	Arabidopsis thaliana cation/H+ exchanger (CHX18) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001344405.1	ncRNA:22   CGACUUCAAUAACCAUCCUAAU   1   |||||||||||||||=|||||| targets:341   GCUGAAGUUAUUGGUGGGAUUA   362 Target Full Sequence	1.5	Arabidopsis thaliana cation/H+ exchanger 18 (CHX18), mRNA	cation/H+ exchanger 18(CHX18)	coding protein	psRNATarget
BX831665.1	ncRNA:22   CGACUUCAAUAACCAUCCUAAU   1   |||||||||||||||=|||||| targets:404   GCUGAAGUUAUUGGUGGGAUUA   425 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_123525.4	ncRNA:22   CGACUUCAAUAACCAUCCUAAU   1   |||||||||||||||=|||||| targets:609   GCUGAAGUUAUUGGUGGGAUUA   630 Target Full Sequence	1.5	Arabidopsis thaliana cation/H+ exchanger 18 (CHX18), mRNA	cation/H+ exchanger 18(CHX18)	coding protein	psRNATarget

Reference

1	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).