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BaseInfo

ncRNA ID	zma-miR394a-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:193819088-193819213 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	21 - UUGGCAUUCUGUCCACCUCC - 40
Stem-loop(if miRNA)	--  C      UGA G      -      U C           UCUCGCCGAUCUU      --A U   GG GCUUAC   A AGUUCC UUGGCA U UGUCCACCUCC             GCAGAA   G U   || ||||||   | |||||| |||||| | |||||||||||             ||||||   |   UC CGGAUG   U UCGAGG AACCGU A ACGGGUGGAGG             UGUCUU   C U CC  -      --- G      U      C U           -UUUUUUUUACGU      GAC A
Stem-loop sequence	GGCGCUUACUGAAGAGUUCCUUGGCAUUCUGUCCACCUCCUCUCGCCGAUCUUGCAGAAAGUUUACCAGUUCUGUUGCAUUUUUUUUGGAGGUGGGCAUACUGCCAAUGGAGCUGUGUAGGCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT036068.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:248   GGAGGUGGACAGAAUGCCAA   267 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0093O08 mRNA, complete cds	NA	coding protein	psRNATarget
EU948858.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:389   GGAGGUGGACAGAAUGCCAA   408 Target Full Sequence	0.0	Zea mays clone 387772 mRNA sequence	NA	coding protein	psRNATarget
NM_001175876.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:857   GGAGGUGGACAGAAUGCCAA   876 Target Full Sequence	0.0	Zea mays uncharacterized LOC100383214 (LOC100383214), mRNA	NA	coding protein	psRNATarget
BT066604.2	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:857   GGAGGUGGACAGAAUGCCAA   876 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0040F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138815.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:1194   GGAGGUGGACAGAAUGCCAA   1213 Target Full Sequence	0.0	Zea mays uncharacterized LOC100193727 (gpm531b), mRNA	NA	coding protein	psRNATarget
EU972716.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:1194   GGAGGUGGACAGAAUGCCAA   1213 Target Full Sequence	0.0	Zea mays clone 386550 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
AY104147.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:1211   GGAGGUGGACAGAAUGCCAA   1230 Target Full Sequence	0.0	Zea mays PCO106418 mRNA sequence	NA	coding protein	psRNATarget
BT085120.1	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:1195   GGAGGUGGACAGAAUGCCAA   1214 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0295K17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658703.2	ncRNA:20   CCUCCACCUGUCUUACGGUU   1   |||||||||||||||||||| targets:1285   GGAGGUGGACAGAAUGCCAA   1304 Target Full Sequence	0.0	PREDICTED: Zea mays F-box only protein 6 (LOC103636344), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).