| ncRNA ID | zma-miR162-3p |
| Species | Zea mays |
| Class | miRNA |
| Genome position | chr5:182040463-182040592 [-] |
| Reference genome | RefGen_v2 |
| Source | miRBase |
| Length | 20 |
| Mature sequence(if miRNA) | 2 - UCGAUAAACCUCUGCAUCCA - 21 |
| Stem-loop(if miRNA) |
GC U UC U C -G - UCCGGCCGGGAGUGGUGGUU CUGG GCAG GGUUUAUCGAUC UUCCU GC UUGU CUG G C |||| |||| |||||||||||| ||||| || |||| ||| | A GACC CGUC CCAAAUAGCUGG AAGGG CG AACA CGC C A UA U CU - C AA U GACGACGUUGUUAUUUUGCG |
| Stem-loop sequence | CUGGGCGCAGUGGUUUAUCGAUCUCUUCCUUGCCUUGUGCUGGUCCGGCCGGGAGUGGUGGUUCAAGCGUUUUAUUGUUGCAGCAGCUCGCAAACAACGCGGGAAUCGGUCGAUAAACCUCUGCAUCCAG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| KR230388.1 |
|
3.0 | Zea mays cultivar B73 dicer-like protein 1 (dcl1) mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
| NM_001349019.1 |
|
3.0 | Zea mays uncharacterized LOC100381417 (LOC100381417), mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_020537615.1 |
|
3.0 | PREDICTED: Zea mays uncharacterized LOC100381417 (LOC100381417), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_020537617.1 |
|
3.0 | PREDICTED: Zea mays uncharacterized LOC100381417 (LOC100381417), transcript variant X2, mRNA | NA | coding protein | psRNATarget |
| 1 | PMID:19936050
"A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009). |