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BaseInfo

ncRNA ID zma-miR162-5p
Species Zea mays
Class miRNA
Genome position chr5:182040463-182040592 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 108 - GGGCGCAGUGGUUUAUCGAUC - 128
Stem-loop(if miRNA)     GC    U            UC     U  C    -G   - UCCGGCCGGGAGUGGUGGUU
CUGG  GCAG GGUUUAUCGAUC  UUCCU GC UUGU  CUG G                    C
||||  |||| ||||||||||||  ||||| || ||||  ||| |                    A
GACC  CGUC CCAAAUAGCUGG  AAGGG CG AACA  CGC C                    A
    UA    U            CU     -  C    AA   U GACGACGUUGUUAUUUUGCG
Stem-loop sequence CUGGGCGCAGUGGUUUAUCGAUCUCUUCCUUGCCUUGUGCUGGUCCGGCCGGGAGUGGUGGUUCAAGCGUUUUAUUGUUGCAGCAGCUCGCAAACAACGCGGGAAUCGGUCGAUAAACCUCUGCAUCCAG

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).