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BaseInfo

ncRNA ID	zma-miR827-3p
Species	Zea mays
Class	miRNA
Genome position	chr5:167348212-167348333 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UUAGAUGACCAUCAGCAAACA - 22
Stem-loop(if miRNA)	-GU                           GCUU     GAUGGAUUGGUGCAUGCAUGG    UUUGUUGGUGGUCAUUUAACCAUGCAU    CGAUC                     A    |||||||||||||||||||||||||||    |||||                     U    AAACGACUACCAGUAGAUUGGUACGUG    CGCGG                     U UAC                           ACUA     UGUACGUAGUGUGAUACGUUA
Stem-loop sequence	GUUUUGUUGGUGGUCAUUUAACCAUGCAUGCUUCGAUCGAUGGAUUGGUGCAUGCAUGGAUUAUUGCAUAGUGUGAUGCAUGUGGCGCAUCAGUGCAUGGUUAGAUGACCAUCAGCAAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008668990.2	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:185   CGUUUGCUGAUGUUCAUCUAA   205 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008668984.2	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:186   CGUUUGCUGAUGUUCAUCUAA   206 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547409.1	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:181   CGUUUGCUGAUGUUCAUCUAA   201 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008668983.2	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:186   CGUUUGCUGAUGUUCAUCUAA   206 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547410.1	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:185   CGUUUGCUGAUGUUCAUCUAA   205 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546117.1	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:465   CGUUUGCUGAUGUUCAUCUAA   485 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein OsI_17046-like (LOC103641951), mRNA	NA	coding protein	psRNATarget
XM_020547411.1	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   *|||||||||||*|||||||| targets:180   CGUUUGCUGAUGUUCAUCUAA   200 Target Full Sequence	1.5	PREDICTED: Zea mays SPX domain-containing membrane protein (cl35113_1), transcript variant X9, mRNA	NA	coding protein	psRNATarget
BT086531.1	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   **||||=|||||||||||||= targets:260   GUUUUGUUGAUGGUCAUCUAG   280 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0178H02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196532.1	ncRNA:21   ACAAACGACUACCAGUAGAUU   1   **||||=|||||||||||||= targets:260   GUUUUGUUGAUGGUCAUCUAG   280 Target Full Sequence	2.0	Zea mays SPX domain-containing membrane protein (LOC100501893), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).