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BaseInfo

ncRNA ID	zma-miR529-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:160574955-160575080 [+]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - AGAAGAGAGAGAGUACAGCCU - 22
Stem-loop(if miRNA)	--            A          -   GC   GUAC     -----   A  UC      CUCU   GAGAAGAGAGAG GUACAGCCUU GUU  CAU    ACACU     CAG UA  AACAGU    U   |||||||||||| |||||||||| |||  |||    |||||     ||| ||  ||||||    A   UUCUUCUCUCUC CAUGUCGGAA UAG  GUG    UGUGA     GUC AU  UUGUCG    U UC            C          G   UA   -ACC     UUAUU   C  CA      UUUA
Stem-loop sequence	GAGAAGAGAGAGAGUACAGCCUUGUUGCCAUGUACACACUCAGAUAUCAACAGUCUCUUAUAUUUGCUGUUACUACCUGUUAUUAGUGUCCAGUGAUGAUGAAGGCUGUACCCUCUCUCUUCUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU947023.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:279   UAGCUGUGCUCUCUCUCUUCU   299 Target Full Sequence	1.0	Zea mays clone 326226 mRNA sequence	NA	coding protein	psRNATarget
HQ858679.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:759   CAGCUGUGCUCUCUCUCUUCU   779 Target Full Sequence	1.0	Zea mays clone UT1135 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
KJ726823.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:774   CAGCUGUGCUCUCUCUCUUCU   794 Target Full Sequence	1.0	Zea mays clone pUT3362 SBP transcription factor (SBP23) mRNA, partial cds	NA	coding protein	psRNATarget
KJ726820.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:807   CAGCUGUGCUCUCUCUCUUCU   827 Target Full Sequence	1.0	Zea mays clone pUT3359 SBP transcription factor (SBP8) mRNA, partial cds	NA	coding protein	psRNATarget
AJ011618.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:590   CAGCUGUGCUCUCUCUCUUCU   610 Target Full Sequence	1.0	Zea mays mRNA for SBP-domain protein 5, partial	NA	coding protein	psRNATarget
EU972995.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:913   CAGCUGUGCUCUCUCUCUUCU   933 Target Full Sequence	1.0	Zea mays clone 391427 squamosa promoter-binding-like protein 9 mRNA, complete cds	NA	coding protein	psRNATarget
BT041777.2	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:924   CAGCUGUGCUCUCUCUCUUCU   944 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143473.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:927   CAGCUGUGCUCUCUCUCUUCU   947 Target Full Sequence	1.0	Zea mays squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (SBP23), mRNA	NA	coding protein	psRNATarget
BT037938.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:927   CAGCUGUGCUCUCUCUCUUCU   947 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0203K20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001308478.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1050   CAGCUGUGCUCUCUCUCUUCU   1070 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 17 (LOC542666), mRNA	NA	coding protein	psRNATarget
NM_001301523.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1050   UAGCUGUGCUCUCUCUCUUCU   1070 Target Full Sequence	1.0	Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), mRNA	NA	coding protein	psRNATarget
BT054334.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1050   UAGCUGUGCUCUCUCUCUUCU   1070 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0338P09 mRNA, complete cds	NA	coding protein	psRNATarget
BT084089.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1041   CAGCUGUGCUCUCUCUCUUCU   1061 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073B10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681329.2	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1355   UAGCUGUGCUCUCUCUCUUCU   1375 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681327.2	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1358   UAGCUGUGCUCUCUCUCUUCU   1378 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681328.2	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1358   UAGCUGUGCUCUCUCUCUUCU   1378 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC103654498), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665371.2	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1403   CAGCUGUGCUCUCUCUCUUCU   1423 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665363.2	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|||||=||||||||||||| targets:1406   CAGCUGUGCUCUCUCUCUUCU   1426 Target Full Sequence	1.0	PREDICTED: Zea mays squamosa promoter-binding-like protein 14 (LOC541996), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JC611929.1	ncRNA:21   UCCGAC-AUGAGAGAGAGAAGA   1   *|||||-|=||||||||||||| targets:626   CGGCUGGUGCUCUCUCUCUUCU   647 Target Full Sequence	3.0	Sequence 91 from Patent WO2014106838	NA	coding protein	psRNATarget
HQ858696.1	ncRNA:21   UCCGAC-AUGAGAGAGAGAAGA   1   *|||||-|=||||||||||||| targets:626   CGGCUGGUGCUCUCUCUCUUCU   647 Target Full Sequence	3.0	Zea mays clone UT1152 SBP transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
AJ011619.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   ||*=|||=||||||||||||| targets:554   AGCUUGUGCUCUCUCUCUUCU   574 Target Full Sequence	3.0	Zea mays mRNA for SBP-domain protein 6, partial	NA	coding protein	psRNATarget
KU131572.1	ncRNA:21   UCC-GACAUGAGAGAGAGAAGA   1   *||-||||=||||||||||||| targets:994   CGGACUGUGCUCUCUCUCUUCU   1015 Target Full Sequence	3.0	Zea mays cultivar B73 squamosa promoter binding-like protein (Tga1) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001318379.1	ncRNA:21   UCCGAC-AUGAGAGAGAGAAGA   1   *|||||-|=||||||||||||| targets:735   CGGCUGGUGCUCUCUCUCUUCU   756 Target Full Sequence	3.0	Zea mays Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (LOC100279436), mRNA	NA	coding protein	psRNATarget
KU131571.1	ncRNA:21   UCC-GACAUGAGAGAGAGAAGA   1   *||-||||=||||||||||||| targets:1008   CGGACUGUGCUCUCUCUCUUCU   1029 Target Full Sequence	3.0	Zea mays cultivar B73 squamosa promoter binding-like protein (Not1) mRNA, complete cds	NA	coding protein	psRNATarget
AY883560.1	ncRNA:21   UCC-GACAUGAGAGAGAGAAGA   1   *||-||||=||||||||||||| targets:987   CGGACUGUGCUCUCUCUCUUCU   1008 Target Full Sequence	3.0	Zea mays cultivar inbred line W22 teosinte glume architecture 1 (tga1) mRNA, complete cds	NA	coding protein	psRNATarget
EU964656.1	ncRNA:21   UCCGAC-AUGAGAGAGAGAAGA   1   *|||||-|=||||||||||||| targets:757   CGGCUGGUGCUCUCUCUCUUCU   778 Target Full Sequence	3.0	Zea mays clone 280651 mRNA sequence	NA	coding protein	psRNATarget
BT054238.1	ncRNA:21   UCCGAC-AUGAGAGAGAGAAGA   1   *|||||-|=||||||||||||| targets:883   CGGCUGGUGCUCUCUCUCUUCU   904 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds	NA	coding protein	psRNATarget
EU964361.1	ncRNA:21   UCC-GACAUGAGAGAGAGAAGA   1   *||-||||=||||||||||||| targets:1197   CGGACUGUGCUCUCUCUCUUCU   1218 Target Full Sequence	3.0	Zea mays clone 278288 mRNA sequence	NA	coding protein	psRNATarget
XM_008680176.2	ncRNA:21   UCC-GACAUGAGAGAGAGAAGA   1   *||-||||=||||||||||||| targets:1242   CGGACUGUGCUCUCUCUCUUCU   1263 Target Full Sequence	3.0	PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653214), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680174.2	ncRNA:21   UCC-GACAUGAGAGAGAGAAGA   1   *||-||||=||||||||||||| targets:1580   CGGACUGUGCUCUCUCUCUUCU   1601 Target Full Sequence	3.0	PREDICTED: Zea mays teosinte glume architecture 1-like (LOC103653213), mRNA	NA	coding protein	psRNATarget
XM_008663869.2	ncRNA:21   UCCGACAUGAGAGAGAGA-AGA   1   **||||||||||||||||-||| targets:29   UAGCUGUACUCUCUCUCUCUCU   50 Target Full Sequence	3.0	PREDICTED: Zea mays naked endosperm2 (LOC100304401), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU961518.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:10   CCGUUGUGCUCUCUCUCUUCA   30 Target Full Sequence	3.0	Zea mays clone 236101 metallothionein-like protein type 2 mRNA, complete cds	NA	coding protein	psRNATarget
EU944879.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:12   CCGUUGUGCUCUCUCUCUUCA   32 Target Full Sequence	3.0	Zea mays clone 234475 mRNA sequence	NA	coding protein	psRNATarget
NM_001147166.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:13   CCGUUGUGCUCUCUCUCUUCA   33 Target Full Sequence	3.0	Zea mays p8MTCP1 (LOC100272713), mRNA	NA	coding protein	psRNATarget
EU959525.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:13   CCGUUGUGCUCUCUCUCUUCA   33 Target Full Sequence	3.0	Zea mays clone 218425 p8MTCP1 mRNA, complete cds	NA	coding protein	psRNATarget
EU952333.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:16   CCGUUGUGCUCUCUCUCUUCA   36 Target Full Sequence	3.0	Zea mays clone 1277815 p8MTCP1 mRNA, complete cds	NA	coding protein	psRNATarget
EU958869.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:13   CCGUUGUGCUCUCUCUCUUCA   33 Target Full Sequence	3.0	Zea mays clone 208136 p8MTCP1 mRNA, complete cds	NA	coding protein	psRNATarget
EU958874.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:12   CCGUUGUGCUCUCUCUCUUCA   32 Target Full Sequence	3.0	Zea mays clone 208146 mRNA sequence	NA	coding protein	psRNATarget
EU945800.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:12   CCGUUGUGCUCUCUCUCUUCA   32 Target Full Sequence	3.0	Zea mays clone 285868 mRNA sequence	NA	coding protein	psRNATarget
EU952430.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:9   CCGUUGUGCUCUCUCUCUUCA   29 Target Full Sequence	3.0	Zea mays clone 1280224 mRNA sequence	NA	coding protein	psRNATarget
AY105039.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **|=|||=||||||||||||* targets:75   CCGUUGUGCUCUCUCUCUUCA   95 Target Full Sequence	3.0	Zea mays PCO113080 mRNA sequence	NA	coding protein	psRNATarget
XM_020538420.1	ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1   **||*||=||||||||||||| targets:639   CUGCCGUGCUCUCUCUCUUCU   659 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109939933 (LOC109939933), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).