Search result

BaseInfo

ncRNA ID	zma-miR397b-3p
Species	Zea mays
Class	miRNA
Genome position	chr5:82423152-82423235 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - CCAGCGCUGCACUCAAUUACG - 22
Stem-loop(if miRNA)	--AUC      C         A      A     CGU   UCC      AUUGAG GCAGCGUUG UGAGCC GCCGC   GCC   C      |||||| ||||||||| |||||| |||||   |||   C      UAACUC CGUCGCGAC ACUCGG CGGCG   CGG   U CGCAU      A         C      -     --U   CUG
Stem-loop sequence	AUCAUUGAGCGCAGCGUUGAUGAGCCAGCCGCCGUGCCUCCCCUGUCGGCUGCGGCGGCUCACCAGCGCUGCACUCAAUUACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235487.1	ncRNA:21   GCAUUAACUCACGUCGCGACC   1   ||||||||||||||||||||| targets:6   CGUAAUUGAGUGCAGCGCUGG   26 Target Full Sequence	0.0	Sequence 1482 from Patent EP2985353	NA	coding protein	psRNATarget
HI403357.1	ncRNA:21   GCAUUAACUCACGUCGCGACC   1   ||||||||||||||||||||| targets:6   CGUAAUUGAGUGCAGCGCUGG   26 Target Full Sequence	0.0	Sequence 1482 from Patent EP2074227	NA	coding protein	psRNATarget
HI403069.1	ncRNA:21   GCAUUAACUCACGUCGCGACC   1   ||||||||||||||||||||| targets:6   CGUAAUUGAGUGCAGCGCUGG   26 Target Full Sequence	0.0	Sequence 1194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235199.1	ncRNA:21   GCAUUAACUCACGUCGCGACC   1   ||||||||||||||||||||| targets:6   CGUAAUUGAGUGCAGCGCUGG   26 Target Full Sequence	0.0	Sequence 1194 from Patent EP2985353	NA	coding protein	psRNATarget
JB163530.1	ncRNA:21   GCAUUAACUCACGUCGCGACC   1   ||||||||||||||||||||| targets:6   CGUAAUUGAGUGCAGCGCUGG   26 Target Full Sequence	0.0	Sequence 1194 from Patent EP2559767	NA	coding protein	psRNATarget
JB163818.1	ncRNA:21   GCAUUAACUCACGUCGCGACC   1   ||||||||||||||||||||| targets:6   CGUAAUUGAGUGCAGCGCUGG   26 Target Full Sequence	0.0	Sequence 1482 from Patent EP2559767	NA	coding protein	psRNATarget

Reference

1	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).