Search result

BaseInfo

ncRNA ID	zma-miR168a-3p
Species	Zea mays
Class	miRNA
Genome position	chr5:74340501-74340604 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	20
Mature sequence(if miRNA)	19 - CCCGCCUUGCACCAAGUGAA - 38
Stem-loop(if miRNA)	GAA  CG     C   G GC             AU     C   CCG    G    GC  CGCCG CUC G  UCGCUUGGUGCAG  CGGGA CCG   CCCG C    ||  ||||| ||| |  |||||||||||||  ||||| |||   |||| C    CG  GCGGC GAG C  AGUGAACCACGUU  GCCCU GGC   GGGC G -AG  AG     C   G UA             CC     A   --A    A
Stem-loop sequence	GAAGCCGCGCCGCCUCGGGCUCGCUUGGUGCAGAUCGGGACCCGCCGCCCGGCCGACGGGACGGAUCCCGCCUUGCACCAAGUGAAUCGGAGCCGGCGGAGCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069329.2	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   |||||||||||||||||||| targets:1664   UUCACUUGGUGCAAGGCGGG   1683 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0095L21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176734.1	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   |||||||||||||||||||| targets:1664   UUCACUUGGUGCAAGGCGGG   1683 Target Full Sequence	0.0	Zea mays uncharacterized LOC100384155 (LOC100384155), mRNA	NA	coding protein	psRNATarget
LQ240689.1	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   |||=|||||||||||||||| targets:9   UUCGCUUGGUGCAAGGCGGG   28 Target Full Sequence	1.0	Sequence 6684 from Patent EP2985353	NA	coding protein	psRNATarget
JB169020.1	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   |||=|||||||||||||||| targets:9   UUCGCUUGGUGCAAGGCGGG   28 Target Full Sequence	1.0	Sequence 6684 from Patent EP2559767	NA	coding protein	psRNATarget
HI408559.1	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   |||=|||||||||||||||| targets:9   UUCGCUUGGUGCAAGGCGGG   28 Target Full Sequence	1.0	Sequence 6684 from Patent EP2074227	NA	coding protein	psRNATarget
BT065747.2	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   ||||||||*||||||||||| targets:1275   UUCACUUGAUGCAAGGCGGG   1294 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
BT053999.2	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   ||||||||*||||||||||| targets:2445   UUCACUUGAUGCAAGGCGGG   2464 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:20   AAGUGAACCACGUUCCGCCC   1   ||||||||*||||||||||| targets:2445   UUCACUUGAUGCAAGGCGGG   2464 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis"; Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA; Cell Res. 15:336-360(2005).
2	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).