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BaseInfo

ncRNA ID	zma-miR166d-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:21933694-21933797 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	82 - GGAAUGUUGUCUGGUUCAAGG - 102
Stem-loop(if miRNA)	GU      UU         A      UU   UUUGU      ---UCUGUG   A   GGAAUG  GUCUGGUUC AGGUCU  UGC     GAUCCA         UAG G   ||||||  ||||||||| ||||||  |||     ||||||         ||| C   CCUUAC  CGGACCAGG UCUAGA  ACG     CUAGGU         AUC U CC      UU         C      --   ----U      UCCUUAUGA   U
Stem-loop sequence	GUGGAAUGUUGUCUGGUUCAAGGUCUUUUGCUUUGUGAUCCAUCUGUGUAGAGCUUCUAAGUAUUCCUUGGAUCUGCAAGAUCUCGGACCAGGCUUCAUUCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163904.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   ||||||||||||||||||||| targets:104   CCUUGAACCAGACAACAUUCC   124 Target Full Sequence	0.0	Sequence 1568 from Patent EP2559767	NA	coding protein	psRNATarget
HI403135.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   ||||||||||||||||||||| targets:104   CCUUGAACCAGACAACAUUCC   124 Target Full Sequence	0.0	Sequence 1260 from Patent EP2074227	NA	coding protein	psRNATarget
JB163596.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   ||||||||||||||||||||| targets:104   CCUUGAACCAGACAACAUUCC   124 Target Full Sequence	0.0	Sequence 1260 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235573.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   ||||||||||||||||||||| targets:104   CCUUGAACCAGACAACAUUCC   124 Target Full Sequence	0.0	Sequence 1568 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235265.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   ||||||||||||||||||||| targets:104   CCUUGAACCAGACAACAUUCC   124 Target Full Sequence	0.0	Sequence 1260 from Patent EP2985353	NA	coding protein	psRNATarget
HI403443.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   ||||||||||||||||||||| targets:104   CCUUGAACCAGACAACAUUCC   124 Target Full Sequence	0.0	Sequence 1568 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235238.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 1233 from Patent EP2985353	NA	coding protein	psRNATarget
JB163569.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 1233 from Patent EP2559767	NA	coding protein	psRNATarget
HI403108.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 1233 from Patent EP2074227	NA	coding protein	psRNATarget
JB163871.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 1535 from Patent EP2559767	NA	coding protein	psRNATarget
HI408663.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 6788 from Patent EP2074227	NA	coding protein	psRNATarget
JB169124.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 6788 from Patent EP2559767	NA	coding protein	psRNATarget
HI403410.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 1535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235540.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 1535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240793.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||| targets:75   CCUCGAGCCAGACAACAUUCC   95 Target Full Sequence	2.0	Sequence 6788 from Patent EP2985353	NA	coding protein	psRNATarget
JB163948.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	3.0	Sequence 1612 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235313.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	3.0	Sequence 1308 from Patent EP2985353	NA	coding protein	psRNATarget
HI403487.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	3.0	Sequence 1612 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235617.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	3.0	Sequence 1612 from Patent EP2985353	NA	coding protein	psRNATarget
HI403183.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	3.0	Sequence 1308 from Patent EP2074227	NA	coding protein	psRNATarget
JB163644.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   |||*||=|||||||||||||= targets:75   CCUCGAGCCAGACAACAUUCU   95 Target Full Sequence	3.0	Sequence 1308 from Patent EP2559767	NA	coding protein	psRNATarget
JB163592.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   =||**|||||||||||||||| targets:114   UCUCCAACCAGACAACAUUCC   134 Target Full Sequence	2.0	Sequence 1256 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235567.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   =||**|||||||||||||||| targets:114   UCUCCAACCAGACAACAUUCC   134 Target Full Sequence	2.0	Sequence 1562 from Patent EP2985353	NA	coding protein	psRNATarget
HI403131.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   =||**|||||||||||||||| targets:114   UCUCCAACCAGACAACAUUCC   134 Target Full Sequence	2.0	Sequence 1256 from Patent EP2074227	NA	coding protein	psRNATarget
HI403437.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   =||**|||||||||||||||| targets:114   UCUCCAACCAGACAACAUUCC   134 Target Full Sequence	2.0	Sequence 1562 from Patent EP2074227	NA	coding protein	psRNATarget
JB163898.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   =||**|||||||||||||||| targets:114   UCUCCAACCAGACAACAUUCC   134 Target Full Sequence	2.0	Sequence 1562 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235261.1	ncRNA:21   GGAACUUGGUCUGUUGUAAGG   1   =||**|||||||||||||||| targets:114   UCUCCAACCAGACAACAUUCC   134 Target Full Sequence	2.0	Sequence 1256 from Patent EP2985353	NA	coding protein	psRNATarget

Reference

1	PMID:14999285 "microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity"; Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC; Nature. 428:84-88(2004).
2	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).