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BaseInfo

ncRNA ID zma-miR171m-3p
Species Zea mays
Class miRNA
Genome position chr5:20310731-20310812 [-]
Reference genome RefGen_v2
Source miRBase
Length 21
Mature sequence(if miRNA) 2 - GGAUUGAGCCGCGUCAAUAUC - 22
Stem-loop(if miRNA) --           C          AG         AUA AU
  GUAUUGGCGCG CUCAAUCCGA  GCGUGGCUG   G  U
  ||||||||||| ||||||||||  |||||||||   |  G
  UAUAACUGCGC GAGUUAGGUU  UGUACCGAC   C  G
UC           C          CU         -GG GC
Stem-loop sequence GUAUUGGCGCGCCUCAAUCCGAAGGCGUGGCUGAUAGAUUGGCGCGGCAGCCAUGUUCUUGGAUUGAGCCGCGUCAAUAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948879.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:604   GAUAUUGGCGCGGCUCAAUCA   624

2.0 Zea mays clone 388565 mRNA sequence NA coding protein psRNATarget
XM_020541749.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:360   GAUAUUGGCGCGGCUCAAUCA   380

2.0 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103634376), mRNA NA coding protein psRNATarget
KJ726875.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:438   GAUAUUGGCGCGGCUCAAUCA   458

2.0 Zea mays clone pUT3416 GRAS transcription factor (GRAS31) mRNA, partial cds NA coding protein psRNATarget
JX428447.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:498   GAUAUUGGCGCGGCUCAAUCA   518

2.0 Zea mays subsp. mays clone pUT3041 GRAS32 GRAS type transcription factor mRNA, partial cds NA coding protein psRNATarget
EU974370.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:498   GAUAUUGGCGCGGCUCAAUCA   518

2.0 Zea mays clone 447391 scarecrow-like 6 mRNA, complete cds NA coding protein psRNATarget
BT039466.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:554   GAUAUUGGCGCGGCUCAAUCA   574

2.0 Zea mays full-length cDNA clone ZM_BFc0014N06 mRNA, complete cds NA coding protein psRNATarget
NM_001147253.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:554   GAUAUUGGCGCGGCUCAAUCA   574

2.0 Zea mays scarecrow-like 6 (LOC100272800), mRNA NA coding protein psRNATarget
KJ726955.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:771   GAUAUUGGCGCGGCUCAAUCA   791

2.0 Zea mays clone pUT3652 GRAS transcription factor (GRAS10) mRNA, partial cds NA coding protein psRNATarget
BT069447.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:507   GAUAUUGGCGCGGCUCAAUCA   527

2.0 Zea mays full-length cDNA clone ZM_BFb0134J07 mRNA, complete cds NA coding protein psRNATarget
KJ727939.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1107   GAUAUUGGCGCGGCUCAAUCA   1127

2.0 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds NA coding protein psRNATarget
KJ726956.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1137   GAUAUUGGCGCGGCUCAAUCA   1157

2.0 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds NA coding protein psRNATarget
BT018771.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:808   GAUAUUGGCGCGGCUCAAUCA   828

2.0 Zea mays clone EL01N0525E08.d mRNA sequence NA coding protein psRNATarget
BT063504.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1200   GAUAUUGGCGCGGCUCAAUCA   1220

2.0 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds NA coding protein psRNATarget
BT054213.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1078   GAUAUUGGCGCGGCUCAAUCA   1098

2.0 Zea mays full-length cDNA clone ZM_BFb0171M14 mRNA, complete cds NA coding protein psRNATarget
XM_020538634.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1142   GAUAUUGGCGCGGCUCAAUCA   1162

2.0 PREDICTED: Zea mays uncharacterized LOC100279420 (LOC100279420), mRNA NA coding protein psRNATarget
NM_001174511.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1279   GAUAUUGGCGCGGCUCAAUCA   1299

2.0 Zea mays GRAS transcription factor (GRAS79), mRNA NA coding protein psRNATarget
BT062028.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1279   GAUAUUGGCGCGGCUCAAUCA   1299

2.0 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds NA coding protein psRNATarget
BT053927.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:920   GAUAUUGGCGCGGCUCAAUCA   940

2.0 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds NA coding protein psRNATarget
BT063450.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1373   GAUAUUGGCGCGGCUCAAUCA   1393

2.0 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds NA coding protein psRNATarget
NM_001174946.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1373   GAUAUUGGCGCGGCUCAAUCA   1393

2.0 Zea mays Scarecrow-like protein 6 (LOC100382187), mRNA NA coding protein psRNATarget
XM_020552649.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |||||||=||||||||||||*
targets:1381   GAUAUUGGCGCGGCUCAAUCA   1401

2.0 PREDICTED: Zea mays uncharacterized LOC100279263 (LOC100279263), mRNA NA coding protein psRNATarget
LQ239200.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |=|||||=||||*||||||||
targets:14   GGUAUUGGCGCGCCUCAAUCC   34

2.5 Sequence 5195 from Patent EP2985353 NA coding protein psRNATarget
HI407070.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |=|||||=||||*||||||||
targets:14   GGUAUUGGCGCGCCUCAAUCC   34

2.5 Sequence 5195 from Patent EP2074227 NA coding protein psRNATarget
JB167531.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |=|||||=||||*||||||||
targets:14   GGUAUUGGCGCGCCUCAAUCC   34

2.5 Sequence 5195 from Patent EP2559767 NA coding protein psRNATarget
EU950482.1
ncRNA:21   CUAUAACUGCGCCGAGUUAGG   1
  |=|||||=||||*||||||||
targets:161   GGUAUUGGCGCGCCUCAAUCC   181

2.5 Zea mays clone 494016 mRNA sequence NA coding protein psRNATarget

Reference

1 PMID:19936050
"A genome-wide characterization of microRNA genes in maize";
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D;
PLoS Genet. 5:e1000716(2009).
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