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BaseInfo

ncRNA ID	zma-miR171f-5p
Species	Zea mays
Class	miRNA
Genome position	chr5:8541270-8541424 [-]
Reference genome	RefGen_v2
Source	miRBase
Length	21
Mature sequence(if miRNA)	113 - CGAUGUUGGCAUGGCUCAAUC - 133
Stem-loop(if miRNA)	UUGGUUGUU    -     -AG  C                     -------   -    G  --   GGGUGGCUUAUAGCUU          GGCU GAGAG   UG GAUGUUGGCAUGGCUCAAUCA       ACU CGCC GC  CGC                A          |||| |||||   || |||||||||||||||||||||       ||| |||| ||  |||          CCGA CUCUU   AC CUAUAACCGUGCCGAGUUAGU       UGA GCGG CG  GAG                A -----AUAU    U     CCA  A                     UAAUUUG   C    G  UG   CUAGCUUACGCGUCUU
Stem-loop sequence	UUGGUUGUUGGCUGAGAGAGUGCGAUGUUGGCAUGGCUCAAUCAACUCGCCGGCCGCGGGUGGCUUAUAGCUUAAUUCUGCGCAUUCGAUCGAGGUGCGGGCGCAGUGUUUAAUUGAUUGAGCCGUGCCAAUAUCACAACCUUCUCUAGCCUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069726.2	ncRNA:21   CUAACUCGGUACGGUUGUAGC   1   ||||||||||||||||||||| targets:1419   GAUUGAGCCAUGCCAACAUCG   1439 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0216P01 mRNA, complete cds	NA	coding protein	psRNATarget

Reference

1	PMID:15916721 "Identification and characterization of new plant microRNAs using EST analysis"; Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA; Cell Res. 15:336-360(2005).
2	PMID:19936050 "A genome-wide characterization of microRNA genes in maize"; Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D; PLoS Genet. 5:e1000716(2009).